## date Mon May 23 23:09:16 2005 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence chr4_random - Length = 1030282 bps # Optimal Gene Structure. 10 genes. Score = 503.98 # Gene 1 (Reverse). 2 exons. 79 aa. Score = 29.44 Internal 40249 40459 31.41 - 1 0 -1.91 2.46 27.48 23.25 AA 9: 79 chr4_random_1 First 54408 54433 -1.98 - 0 2 0.76 3.02 3.30 -9.10 AA 1: 9 chr4_random_1 >chr4_random_1|SGP_v1.0_predicted_cDNA_1|237_NN ATGGCGCTGGTGGAAGGCCCAGGGGGCCAGGTCTTCCAGCTGGAATCCACCTTCGACCTG AAGCGCTACCTGAGCAGCGCCGAGCGCGCCGGCCTGGCCGCCTCCCTGCAGCTCACCGAG ACGCAGGTTAAGATCTGGTTCCAGAACCGCCGCAACAAGTGGAAGCGGCAGCTGGCAGCC GAGCTGGAGGCGGCCAGCCTGTCCCCGCCGGGAGCGCAGCGCCTGGTCCGCGTGCCG >chr4_random_1|SGP_v1.0_predicted_protein_1|79_AA MALVEGPGGQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAA ELEAASLSPPGAQRLVRVP # Gene 2 (Forward). 2 exons. 60 aa. Score = 3.12 First 235965 235973 -2.57 + 0 0 1.80 2.63 2.05 -3.15 AA 1: 3 chr4_random_2 Terminal 244288 244458 5.70 + 0 0 1.18 0.00 9.85 15.31 AA 4: 60 chr4_random_2 >chr4_random_2|SGP_v1.0_predicted_cDNA_2|180_NN ATGGCGGTGGTGCAGCACCAGTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATA ATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTACGTTGGTTGGTGTG TTTGCATTTGTTTTACTGGATTCTGCCAATAAGAAAGTGTCCCTGGACAGAGATACATAA >chr4_random_2|SGP_v1.0_predicted_protein_2|60_AA MAVVQHQFEFEYQTKVDGEIILHLYDKGGIEQTICTLVGVFAFVLLDSANKKVSLDRDT* # Gene 3 (Reverse). 5 exons. 300 aa. Score = 128.17 Terminal 253890 254135 43.79 - 0 0 0.00 2.26 36.72 8.11 AA 219:300 chr4_random_3 Internal 255689 255919 37.04 - 0 0 2.87 3.51 26.28 15.04 AA 142:218 chr4_random_3 Internal 257101 257157 4.05 - 0 0 -0.05 2.87 7.81 3.02 AA 123:141 chr4_random_3 Internal 258571 258799 26.57 - 1 0 -0.61 -2.29 29.23 12.64 AA 46:122 chr4_random_3 First 258949 259085 16.72 - 0 2 1.78 2.91 14.41 1.87 AA 1: 46 chr4_random_3 >chr4_random_3|SGP_v1.0_predicted_cDNA_3|900_NN ATGGTGCAGACGGATGTGCTCCTACCAGAGCTGGCCCCACAGACAGTGCCACCCTACGAG CTGCCCTGCAAAGAGTATGACGTGGCCAGAAACACGGGCGCCTACACGTCCTCCGGCCTG GCCACCGCTGGCTGGAGGGTGGGCGAGCGACTGCAGGACACGAACAGCTGGAAGTCGGAG CTGCAGCGTGAGGTGGAGGCACTGGCTGCGGAGACCGACCTGCTGCTGGCCCAGAAGCAA CGGCTGGAGCGCGCCCTGGATGCCATGGAGGTGCCCTTCTCCATCACCACTGACAACATG CAGTGCAGCCAGCGCCACCAGCACACCAACCTTTTGCGTGACCATGTGGAGACAGAGCTG CTGAAGGAAGCTGAGCTCATCCGGAACATTCAGGAGCTGCTGAAGAGAGCCATCATGCAA GCACCCCGCAGCGCCTCCACCCCAGAGACCCGGACCAAGTTCACACAGGACAATCTGTGC CACGCCCAGCGCGAGCGCCTGGACTCGGCCAACCTGTGGGTGCTGGTGGACTGCATCCTT CGCGACACCTCCGAGGACCTGGGACTCCAGTGTGACGCCGTGAACCTGGCCTTCGGGCGC CGCTGTGAGGAACTGGAGGACGCGCGGCACAAGCTGCAGCACCACCTGCACAAGCCCCAG CTCACACCCCCCAACACCCCCAAGCTGGTGAGTGAGGTGGAGGAGCTGTACAAGTCCATC ACAGCGCTGCGGGAGAAGCTTCTACAAGCGGAGCAGTCCCTGCGCAACCTCAAGGACATC CACATGAGCCTGGAGAAGGACGTCACCGCCATGACCAACAGTGTCTTCATCGACCGCCAG AAGTGCATGGCCCATCGTACTTGCTACCCCACCATTCTGCAGCTGGCTGGCTACCAGTGA >chr4_random_3|SGP_v1.0_predicted_protein_3|300_AA MVQTDVLLPELAPQTVPPYELPCKEYDVARNTGAYTSSGLATAGWRVGERLQDTNSWKSE LQREVEALAAETDLLLAQKQRLERALDAMEVPFSITTDNMQCSQRHQHTNLLRDHVETEL LKEAELIRNIQELLKRAIMQAPRSASTPETRTKFTQDNLCHAQRERLDSANLWVLVDCIL RDTSEDLGLQCDAVNLAFGRRCEELEDARHKLQHHLHKPQLTPPNTPKLVSEVEELYKSI TALREKLLQAEQSLRNLKDIHMSLEKDVTAMTNSVFIDRQKCMAHRTCYPTILQLAGYQ* # Gene 4 (Forward). 2 exons. 60 aa. Score = 3.19 First 462667 462675 -5.18 + 0 0 1.80 -1.01 4.17 -3.15 AA 1: 3 chr4_random_4 Terminal 470983 471153 8.37 + 0 0 2.77 0.00 9.92 16.17 AA 4: 60 chr4_random_4 >chr4_random_4|SGP_v1.0_predicted_cDNA_4|180_NN ATGGCGGCGGTGCAGTACCAGTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATA ATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTG TTTGCATTTCTTTTACTGGATTCTGCCAATAAGAAAGTGTCCCTGGACAGAGATACGTAA >chr4_random_4|SGP_v1.0_predicted_protein_4|60_AA MAAVQYQFEFEYQTKVDGEIILHLYDKGGIEQTICMLDGVFAFLLLDSANKKVSLDRDT* # Gene 5 (Reverse). 4 exons. 253 aa. Score = 105.55 Terminal 480556 480823 30.42 - 1 0 0.00 1.80 27.38 8.81 AA 164:253 chr4_random_5 Internal 481586 481740 20.31 - 0 2 0.74 1.12 19.46 12.22 AA 113:164 chr4_random_5 Internal 482354 482584 37.65 - 0 0 2.87 3.51 26.57 16.18 AA 36:112 chr4_random_5 First 483282 483386 17.17 - 0 0 -0.68 3.30 16.17 8.14 AA 1: 35 chr4_random_5 >chr4_random_5|SGP_v1.0_predicted_cDNA_5|759_NN ATGAACCGAGAGCACACAGAGATCTGCGAGATGGACTGGTCGGACAAGGTGGAGGCCTAC AACCTCGACGAGACTTGCGGGCGCCACCACAGCCAGAGCACCGAGCCCCGCAGCGCCTCC ACCCCAGAGACCCGGACCAAGTTCACACAGGACAATCTGTGCCACGCCCAGCGCGAGCGC CTGGACTCGGCCAACCTGTGGGTGCTTGTGGACTGCATCCTTCGCGACACCTCCGAGGAC CTGGGACTCCAGTGTGACGCCGTGAACCTGGCCTTCGGGCGCCGCTGTGAGGAACTGGAG GACGTGCGGCACAAGCTGCAGCACCACCTGCACAAGATGCTGCGGGAAATCACAGATCAG GAACACAACGTGGTGGCACTGAAGGAGGCCATCAAGGACAAGGAGGAACCTCTGCACATA GCCCAGACCCGGCTGTACCTGCTCTCACACCGGCCCAACATGCAGCTGTGCCGCGAAGCA GCCCAGTTCAGGTGCATACTTCTGCCCTCCCCAGCCCCAGCTCACACACCCAACACCCCC AAGCTGGTGAGTGAGGTGGAGGAGCTGAACATGTCCATCACAGCGCTGTGGGAGAAGCTT CTAGAAGGGGAGCAGTCCCTTTGCAACCTCGAGGACATCCACATGAGCCTGGAGAAGGAT GTTACCGCCATGACCAACAGTCTCTTCATCGACCGCCAGAAGTGCATGGCCCATCGTACT TGCTACACCCCCATCCTGCAGCTGGCTGGCTACCAGTGA >chr4_random_5|SGP_v1.0_predicted_protein_5|253_AA MNREHTEICEMDWSDKVEAYNLDETCGRHHSQSTEPRSASTPETRTKFTQDNLCHAQRER LDSANLWVLVDCILRDTSEDLGLQCDAVNLAFGRRCEELEDVRHKLQHHLHKMLREITDQ EHNVVALKEAIKDKEEPLHIAQTRLYLLSHRPNMQLCREAAQFRCILLPSPAPAHTPNTP KLVSEVEELNMSITALWEKLLEGEQSLCNLEDIHMSLEKDVTAMTNSLFIDRQKCMAHRT CYTPILQLAGYQ* # Gene 6 (Reverse). 2 exons. 174 aa. Score = 43.23 Terminal 485115 485618 49.90 - 0 0 0.00 0.05 47.35 -18.75 AA 7:174 chr4_random_6 First 489626 489643 -6.67 - 0 0 3.88 -2.04 2.37 -6.30 AA 1: 6 chr4_random_6 >chr4_random_6|SGP_v1.0_predicted_cDNA_6|522_NN ATGAGTTTTGAGAAGCGGCTGGAGGTGTGGTTCCAGAACTGCTATGCTCGCTACCACCAG GCCTTCGCCGACTGCAACCAGTCAGAGCGGGAGCTGCAGGGGCACGAGAGCCAGCAGCTG GCCGCAGAGACCCAGGCGCTGGCACAGTCGACACAGCAAGACTCCACGTGCAGGGTGGGC GAGCGACTGCAGGACACGCACAGCTGGAAGTCGGAGCTGCAGCGCGAGGTGAAGGTGCTG GCTGCGGAGACCGACCTGCTGCTGGCCCAGAAGCAACGGCTGGAGTGCGCCCTGGATGCC ATGGAGGTGCCCTTCTCCATTGCCACTGACAACCTGCAGTGCAGCCAGTGCCACCAGCAC GCCAACCTTGTGCATGACCATGTGGAGACGGAGCTGCTGAAGGTGCCAGCAGCCTTGGGT GGCCAGGACTTGTGGGCACAGAGAGGAGGAGCCCCCGGCAGTTCATGTGGACAAGCCACG TGGCTGCTGCAAGCACACGGGAGACCAGCCCTCTATGCGTGA >chr4_random_6|SGP_v1.0_predicted_protein_6|174_AA MSFEKRLEVWFQNCYARYHQAFADCNQSERELQGHESQQLAAETQALAQSTQQDSTCRVG ERLQDTHSWKSELQREVKVLAAETDLLLAQKQRLECALDAMEVPFSIATDNLQCSQCHQH ANLVHDHVETELLKVPAALGGQDLWAQRGGAPGSSCGQATWLLQAHGRPALYA* # Gene 7 (Reverse). 1 exons. 23 aa. Score = 0.49 Single 495053 495121 0.49 - 0 0 0.00 -0.90 9.45 4.71 AA 1: 23 chr4_random_7 >chr4_random_7|SGP_v1.0_predicted_cDNA_7|69_NN ATGGGAGTCCTGGACAAGGACGATGGGGAGAGCACCGCCAGCAGCGGGGGTGAGTACTGG AAGATTTAA >chr4_random_7|SGP_v1.0_predicted_protein_7|23_AA MGVLDKDDGESTASSGGEYWKI* # Gene 8 (Forward). 2 exons. 150 aa. Score = 11.54 First 500361 500563 8.97 + 0 2 1.48 1.26 21.02 -71.05 AA 1: 68 chr4_random_8 Terminal 505388 505634 2.57 + 1 0 -1.04 0.00 23.62 -85.40 AA 68:150 chr4_random_8 >chr4_random_8|SGP_v1.0_predicted_cDNA_8|450_NN ATGAAGTTATTCGGCTTCGGGAGCCGCAGGGGCCAGACGGCCCACGGCTCCATAGAACAT GTCTACACGGGTTCCGGATACCGAATCCGGGACTCCGAACTGCAGAAGATCCACAGGGCA GCTGTCAAGGGCGACGCCGTGGGGGTGGAGCGCTGCCTGGCGCGCAGGAGCGGAGACCTG GATGCCCTGGACAAGCAGCACAGAGATGCCTTCAAGAACATCAGTAAGCTCTTTGACAAT GAGTCCAGGAATGACCTGGACCCAGCCATGGACCTGTTAGTGCTGTCTCAGGGACACCAG ACCAACATCCTGGACATCATCCTCATACACAAGGAAGCTCTTACCAAAGTCACGGAGAAC AGGCAACATGTGGCAGAAGGGAAGACAGAGATGCAGAGGCTGATGGCGTCATTATCACAG GAACAGGATTTCTTTGGCCACTTTGGCTGA >chr4_random_8|SGP_v1.0_predicted_protein_8|150_AA MKLFGFGSRRGQTAHGSIEHVYTGSGYRIRDSELQKIHRAAVKGDAVGVERCLARRSGDL DALDKQHRDAFKNISKLFDNESRNDLDPAMDLLVLSQGHQTNILDIILIHKEALTKVTEN RQHVAEGKTEMQRLMASLSQEQDFFGHFG* # Gene 9 (Reverse). 12 exons. 591 aa. Score = 166.06 Terminal 658291 658302 -4.50 - 0 0 0.00 5.80 -0.14 -3.15 AA 588:591 chr4_random_9 Internal 659286 659537 11.15 - 0 0 6.11 6.57 -1.89 34.50 AA 504:587 chr4_random_9 Internal 668370 668540 11.60 - 0 0 3.72 -0.94 13.47 7.52 AA 447:503 chr4_random_9 Internal 668667 668886 15.43 - 1 0 2.73 -1.98 16.60 21.27 AA 373:446 chr4_random_9 Internal 671604 671846 5.61 - 1 2 0.87 2.71 5.68 23.19 AA 292:373 chr4_random_9 Internal 671988 672100 11.14 - 0 2 5.48 0.71 8.28 12.73 AA 255:292 chr4_random_9 Internal 673778 673855 11.38 - 0 0 5.44 3.62 6.52 6.46 AA 229:254 chr4_random_9 Internal 684827 684974 25.17 - 1 0 5.34 2.70 15.86 17.15 AA 179:228 chr4_random_9 Internal 691795 691919 9.70 - 0 2 1.35 5.15 6.96 14.79 AA 138:179 chr4_random_9 Internal 700485 700719 42.25 - 1 0 4.09 5.01 25.83 26.62 AA 59:137 chr4_random_9 Internal 705076 705243 32.45 - 1 2 0.35 4.63 24.35 18.60 AA 3: 59 chr4_random_9 First 707580 707587 -5.31 - 0 2 1.81 1.60 0.40 -2.80 AA 1: 3 chr4_random_9 >chr4_random_9|SGP_v1.0_predicted_cDNA_9|1773_NN ATGGAAGGAGAAATTTCGGCAGAGGCGGACCGGGAACCTCAGCAGCTGCAGAACTACTGG TCAGAAGTGCGCTACACGGTGCGCTGCATCTACCGCCAGGCAGGAACCCCGCTGGCAGAT GACCAGGACCAGTCTCTGGTGCCTGACAAGGAGGGAGTGAAGGAGCTCGTGGATAGGCTC TGCGAGAGGGACCCCTACCAGCTGTACCAGCGTCTGGAACAGCAAGCTCGAGAGTATGTG CTGGAGATGAAGGTCCGCCTGCTCCGGCAGCTGTCGGCTGCGGCCAAGGTGAAGGCACCA TCTGGCCTGCAGGGCCCGCCGCAAGCGCACCAGTTCATCTCCCTCCTGCTTGAGGAGTAC GGCGCCCTCTGCCAGGCCGCACGCTCCATCAGCACCTTCCTTGGCACTCTGGAAAATGAA CACTTGAAAAAGTTCCAAGTGACGTGGGAACTGCATAATAAACACCTGTTTGAAAATCTG GTCTTTTCGGAGCCACTTCTTCAGAGCAACTTGCCCGCACTGGTGTCACAGATCAGGCTA GGAACCACCACACACGACACCTGCAGTGAGGACACATACAGTACCTTGCTGCAGAGGTAC CAGCGTTCCGAGGAGGAGCTGCGCAGAGTCGCCGAGGAGTGGCTGGAGTGCCAGAAGAGG ATCGACGCCTATGTCGACGAGCAGATGACAATGAAAACCAAGCAGCGCATGTTAACAGAA GACTGGGAGCTTTTTAAACAAAGAAGATTCATTGAAGAACAGTTAACCAATAAGAAAGCA GTTACTGGCGAGAACAACTTCACAGACACCATGAGGCACATGTTATCGTCCCGGCTGAGC ATGCCCGACTGCCCCAACTGCAACTACAGGAGAAGATGTGCTTGCGATGACTGCAGTCTC TCACACATCCTCACGTGTGGTATCATGGACCCCCCCGTCACTGATGACATCCACATTCAC CAGCTCCCACTTCAAGTGGATCCTGCTCCTGACTATCTTGCTGAGAGGAGCCCGCCCAGT GTGTCATCTGCAAGCTCGGGGTCCGGCTCCAGCTCTCCCATCACAATTCAGCAGCACCCC AGGCTCATCCTCACAGACAGTGGCTCGGCACCAACTTTTGGCTGGTTTACTCATTGTCTT TCACAATTGAATGACCTCACAGTGACCATCTCTGCTTGTGTCAGTTGTAGTGATGATGAA GATGTTGCACCATTGTCAGCCAAATTTGCTGATATTTATCCATTGAGTAATTATGATGAT ACCGAGGTGGTGGCCAACATGAATGGAATCCACAGCGAATTGAATGGTGGCGGGGAAAAC ATGGCCCTGAAGGATGAGATAAGCAGTACCAGCAGTAGTTCCTCAGAAGCTGATGATGAA GAAGCGGACGGCGAGAGTAGTGGGGAGCCCCCAGGGGCCCCGAAGGAAGATGGAGTGCTG GGAAGCAGGAGCCCCAGGACAGAGGAGAGCAAAGCAGACAGTCCACCCCCATCCTACCCA ACACAGCAGGCTGAACAAGCTCCAAACACTTGTGAATGTCATGTTTGTAAGCAGGAAGCT TCTGGACTGACACCATCTGCAATGACAGCCGGAGCCCTTCCTCCTGGCCATCAGTTCTTG AGCCCAGAGAAGCCCACACACCCTGCACTGCACCTTTACCCTCACATCCATGGACATGTG CCTTTGCACACTGTTCCACACCTGCCACGCCCTCTCATCCACCCCACCTTGTATGCAACG CCCCCCTTCACACACAGTAAGGGGTCACTGTGA >chr4_random_9|SGP_v1.0_predicted_protein_9|591_AA MEGEISAEADREPQQLQNYWSEVRYTVRCIYRQAGTPLADDQDQSLVPDKEGVKELVDRL CERDPYQLYQRLEQQAREYVLEMKVRLLRQLSAAAKVKAPSGLQGPPQAHQFISLLLEEY GALCQAARSISTFLGTLENEHLKKFQVTWELHNKHLFENLVFSEPLLQSNLPALVSQIRL GTTTHDTCSEDTYSTLLQRYQRSEEELRRVAEEWLECQKRIDAYVDEQMTMKTKQRMLTE DWELFKQRRFIEEQLTNKKAVTGENNFTDTMRHMLSSRLSMPDCPNCNYRRRCACDDCSL SHILTCGIMDPPVTDDIHIHQLPLQVDPAPDYLAERSPPSVSSASSGSGSSSPITIQQHP RLILTDSGSAPTFGWFTHCLSQLNDLTVTISACVSCSDDEDVAPLSAKFADIYPLSNYDD TEVVANMNGIHSELNGGGENMALKDEISSTSSSSSEADDEEADGESSGEPPGAPKEDGVL GSRSPRTEESKADSPPPSYPTQQAEQAPNTCECHVCKQEASGLTPSAMTAGALPPGHQFL SPEKPTHPALHLYPHIHGHVPLHTVPHLPRPLIHPTLYATPPFTHSKGSL* # Gene 10 (Reverse). 2 exons. 56 aa. Score = 13.18 Terminal 780505 780654 12.62 - 0 0 0.00 4.69 10.07 19.55 AA 7: 56 chr4_random_10 First 781193 781210 0.56 - 0 0 5.50 -0.57 2.78 1.52 AA 1: 6 chr4_random_10 >chr4_random_10|SGP_v1.0_predicted_cDNA_10|168_NN ATGGACGGATACTCAGAGATCGTGCAGAATGGACGTCTCATCGTTTCCACAGAATGCGGC CATGTCTTCTGTAGCCAGTGCCTCCGTGATTCCCTGAAGAATGCTAATACTTGCCCAACT TGTAGGAAAAAGATCAACCACAAACGGTACCACCCCATTTATATATGA >chr4_random_10|SGP_v1.0_predicted_protein_10|56_AA MDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI*