## date Tue Jul 27 21:02:02 2004 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence chr6_hla_hap2 - Length = 150447 bps # Optimal Gene Structure. 6 genes. Score = 61.62 # Gene 1 (Reverse). 1 exons. 77 aa. Score = 0.50 Single 3695 3925 0.50 - 0 0 0.00 1.12 13.31 0.00 AA 1: 77 chr6_hla_hap2_1 >chr6_hla_hap2_1|geneid_v1.2_predicted_cDNA_1|231_NN ATGACCACATTCAAGGAAGAACCTTCTGCCCCAGCTTTGCAAGATGAAAAGCTTTCCCAC TTGGCTCTTATTCTTCCACAAGAGCTTTGTCAGGACCAGGTTGTTACTGGTTCAGCAACT CTGCAGAAAATGTCCTCCCTTGTGGCTTCCTTAGCTCCTGTTCTTGGCCTGAAGCCTCAC AGCTTTGATGGCAGTGCCTCATCTTCAACTTTTGTGCTTCCCTTTACCTAA >chr6_hla_hap2_1|geneid_v1.2_predicted_protein_1|77_AA MTTFKEEPSAPALQDEKLSHLALILPQELCQDQVVTGSATLQKMSSLVASLAPVLGLKPH SFDGSASSSTFVLPFT* # Gene 2 (Reverse). 6 exons. 266 aa. Score = 16.74 Terminal 5557 5843 4.70 - 2 0 0.00 5.13 16.54 0.00 AA 171:266 chr6_hla_hap2_2 Internal 8581 8850 11.73 - 2 1 3.70 4.12 30.09 0.00 AA 81:171 chr6_hla_hap2_2 Internal 18414 18514 1.28 - 1 1 4.20 4.12 4.46 0.00 AA 47: 81 chr6_hla_hap2_2 Internal 50867 50890 0.51 - 1 2 2.59 6.12 0.71 0.00 AA 39: 47 chr6_hla_hap2_2 Internal 51612 51645 -1.49 - 2 2 2.17 3.22 0.70 0.00 AA 28: 39 chr6_hla_hap2_2 First 51680 51761 0.01 - 0 1 4.53 1.65 3.26 0.00 AA 1: 28 chr6_hla_hap2_2 >chr6_hla_hap2_2|geneid_v1.2_predicted_cDNA_2|798_NN ATGCTGAGTGGAGTCGGGGGCTTTGTGCTGGGCCTGCTCTTCCTTGGGGCCGGGCTGTTT CTCTACTTCAGGAATCAGAAAGACTTTTCTGGAGGAGGAAATATGGCTTTGCAGAGGACA CTCTGGACTTCAGCCAACAGCATGGTGTGTCTGAAGCTCCCTGGAGGCTCCTGTATGGCA GCGCTGACAGTGACATTGACGGTGCTGAGCTCCCCACTGGCTTTGGCTGGGGACACCCAA CCACGTTTCTTGGAGCAGGCTAAGTGTGAGTGTCATTTCCTCAATGGGACGGAGCGAGTG TGGAACCTGATCAGATACATCTATAACCAAGAGGAGTACGCGCGCTACAACAGTGACCTG GGGGAGTACCAGGCGGTGACGGAGCTGGGGCGGCCTGACGCTGAGTACTGGAACAGCCAG AAGGACCTCCTGGAGCGGAGGCGGGCCGAGGTGGACACCTACTGCAGATACAACTACGGG GTTGTGGAGAGCTTCACAGTGCAGCGGCGAGTCCAACCTAAGGTGACTGTGTATCCTTCA AAGACCCAGCCCCTGCAGCACCACAACCTCCTGGTCTGCTCTGTGAATGGTTTCTATCCA GGCAGCATTGAAGTCAGGTGGTTCCGGAACGGCCAGGAAGAGAAGGCTGGGGTGGTGTCC ACAGGCCTGATCCAGAATGGAGACTGGACCTTCCAGACCCTGGTGATGCTGGAAACAGTT CCTCGGAGTGGAGAGGTTTACACCTGCCAAGTGGAGCATCCAAGCATGATGAGCCCTCTC ACGGTGCAATGGAGTTAG >chr6_hla_hap2_2|geneid_v1.2_predicted_protein_2|266_AA MLSGVGGFVLGLLFLGAGLFLYFRNQKDFSGGGNMALQRTLWTSANSMVCLKLPGGSCMA ALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDL GEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPS KTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETV PRSGEVYTCQVEHPSMMSPLTVQWS* # Gene 3 (Forward). 2 exons. 390 aa. Score = 16.95 First 78029 78070 -2.63 + 0 0 1.40 1.17 3.33 0.00 AA 1: 14 chr6_hla_hap2_3 Terminal 82759 83886 19.57 + 0 0 4.86 0.00 55.39 0.00 AA 15:390 chr6_hla_hap2_3 >chr6_hla_hap2_3|geneid_v1.2_predicted_cDNA_3|1170_NN ATGAAGTCAGAAAAAGTTCTAGAAGGAGAATCAGCTGGCAGGATACTAGTATATATCACA ATTAAAACCCCCTTCTCGGCCTGCGCCCTCGCTGGAGGAACGCAAGCAGGAGGCGGGGGA GTCGGAGGAGGTGGCGGCGCTGGAGCTCCTCCCGGGGACCAGCGACCCGGGGAGCGAGCA CGTCGCTCCGCACCGCTCTTCCTCCAACCGCTGAGCCGTCCCTTCTCGCCCTGTCCCAGA GCAGGCACCGCCGAGGCCCCGCCGCTGGAGCGCGAGGACAGTGGGACCTTCAGTTTGGGG AAGATGATAACAGCTAAGCCAGGGAAAACACCGATTCAGGTATTACACGAATACGGCATG AAGACCAAGAACATCCCAGTTTATGAATGTGAAAGATCTGATGTGCAAATACACGTGCCC ACTTTCACCTTCAGAGTAACCGTTGGTGACATAACCTGCACAGGTGAAGGTACAAGTAAG AAGCTGGCGAAACATAGAGCTGCAGAGGCTGCCATAAACATTTTGAAAGCCAATGCAAGT ACTTGCTTTGCAGTTCCTGACCCCTTAATGCCTGACCCTTCCAAGCAACCAAAGAACCAG CTTAATCTTATTGGTTCATTACAGGAATTGGCTATTCATCATGGCTGGAGACTTCCTGAA TATACCCTTTCCCAGGAGGGAGGACCTGCTCATAAGAGAGAATATACTACAATTTGCAGG CTAGAGTCATTTATGGAAACTGGAAAGGGGGCATCAAAAAAGCAAGCCAAAAGGAATGCT GCTGAGAAATTTCTTGCCAAATTTAGTAATATTTCTCCAGAGAACCACATTTCTTTAACA AATGTAGTAGGACATTCTTTAGGATGTACTTGGCATTCCTTGAGGAATTCTCCTGGTGAA AAGAACAACTTATTGAAAAGAAGCCTCCTTAGTATTCCAAATACAGATTACATCCAGCTG CTTAGTGAAATTGCCAAGGAACAAGGTTTTAATATAACATATTTGGATATAGATGAACTG AGCGCCAATGGACAATATCAATGTCTTGCTGAACTGTCCACCAGCCCCATCACAGTCTGT CATGGCTCCGGTATCTCCTGTGGCAATGCACAAAGTGATGCAGCTCACAATGCTTTGCAG TATTTAAAGATAATAGCAGAAAGAAAGTAA >chr6_hla_hap2_3|geneid_v1.2_predicted_protein_3|390_AA MKSEKVLEGESAGRILVYITIKTPFSACALAGGTQAGGGGVGGGGGAGAPPGDQRPGERA RRSAPLFLQPLSRPFSPCPRAGTAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGM KTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANAS TCFAVPDPLMPDPSKQPKNQLNLIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICR LESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGE KNNLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVC HGSGISCGNAQSDAAHNALQYLKIIAERK* # Gene 4 (Reverse). 3 exons. 166 aa. Score = 3.40 Terminal 85393 85605 2.19 - 0 0 0.00 1.93 16.33 0.00 AA 96:166 chr6_hla_hap2_4 Internal 89732 90004 0.60 - 0 0 -0.13 -1.07 15.79 0.00 AA 5: 95 chr6_hla_hap2_4 First 91308 91319 0.61 - 0 0 4.71 3.27 2.05 0.00 AA 1: 4 chr6_hla_hap2_4 >chr6_hla_hap2_4|geneid_v1.2_predicted_cDNA_4|498_NN ATGCTGCGCCAGGTGACTGTGTATCCTTCAAAAGACCAGCCCCTGCAGCACCACAACCTC CTGGTCTGCTCTGTGAGTGGTTTCTATCCAGGCAGCATTGAAGTCAGGTGGTTCCAGAAT GGCCAGGAAGAGAAGGCTGGGGTGGTGTCCACAGGCCTGATCCAGAATGGAGACTGGACC TTCCAGACCCTGGTGATGCTGGAAACAGTTCCTCAGAATGCAGAGGTTTACACCTGTCAA CTGGAGCACCCAAGCATGATGAGCCTTCTCATGCAGTGGAATGGAGCTTTGGTCACCAGT GAGTTCCAGGACTGCCTGGCCCGGTGCACCATGCATTGCAACCACAAAGCCAAAGATTCA ATAGATGCTGGGAGTAAGGAGCTTCAGGTGAAGCAGCAGCTGGTTGGCTGTGTGACCAAG TGTGTGGATGACCACATGCATGTCATCCCAACTATGACCAAGAAGACAAAGGAGCCTCTC TCATCCATTGGGAAATAA >chr6_hla_hap2_4|geneid_v1.2_predicted_protein_4|166_AA MLRQVTVYPSKDQPLQHHNLLVCSVSGFYPGSIEVRWFQNGQEEKAGVVSTGLIQNGDWT FQTLVMLETVPQNAEVYTCQLEHPSMMSLLMQWNGALVTSEFQDCLARCTMHCNHKAKDS IDAGSKELQVKQQLVGCVTKCVDDHMHVIPTMTKKTKEPLSSIGK* # Gene 5 (Reverse). 1 exons. 35 aa. Score = 2.98 Single 98159 98263 2.98 - 0 0 0.00 4.41 13.32 0.00 AA 1: 35 chr6_hla_hap2_5 >chr6_hla_hap2_5|geneid_v1.2_predicted_cDNA_5|105_NN ATGGGGGAGTTCCGGGCGGTGACTGAGCTGGGGCGGCCTGACGCTGAGTACTGGAACAGC CAGAAGGACATCCTGGAGCAGAAGCGGGCCGAAGTGGACAACTAA >chr6_hla_hap2_5|geneid_v1.2_predicted_protein_5|35_AA MGEFRAVTELGRPDAEYWNSQKDILEQKRAEVDN* # Gene 6 (Reverse). 5 exons. 304 aa. Score = 21.07 Terminal 132978 133189 0.88 - 2 0 0.00 2.57 10.85 0.00 AA 234:304 chr6_hla_hap2_6 Internal 133887 134168 5.48 - 2 1 -0.13 4.64 19.41 0.00 AA 140:234 chr6_hla_hap2_6 Internal 137625 137894 15.23 - 2 1 3.70 4.45 38.34 0.00 AA 50:140 chr6_hla_hap2_6 Internal 146152 146252 0.35 - 1 1 3.59 3.87 3.42 0.00 AA 16: 50 chr6_hla_hap2_6 Internal 147137 147183 -0.86 - 0 2 4.55 1.54 1.23 0.00 AA 1: 16 chr6_hla_hap2_6 >chr6_hla_hap2_6|geneid_v1.2_predicted_cDNA_6|912_NN ACCCCTGAATACTTGGATTGCACAGTTGACCTTATCACATTGTTAGGCATGGTGTGTCTG AAGTTCCCTGGAGGCTCCTGCATGGCAGCTCTGACAGTGACACTGATGGTGCTGAGCTCC CCACTGGCTTTGGCTGGGGACACCCGACCACGTTTCTTGGAGCAGGTTAAACATGAGTGT CATTTCTTCAACGGGACGGAGCGGGTGCGGTTCCTGGACAGATACTTCTATCACCAAGAG GAGTACGTGCGCTTCGACAGCGACGTGGGGGAGTACCGGGCGGTGACGGAGCTGGGGCGG CCTGATGCCGAGTACTGGAACAGCCAGAAGGACCTCCTGGAGCAGAAGCGGGCCGCGGTG GACACCTACTGCAGACACAACTACGGGGTTGGTGAGAGCTTCACAGTGCAGCGGCGAGTC TATCCTGAGGTGACTGTGTATCCTGCAAAGACCCAGCCCCTGCAGCACCACAACCTCCTG GTCTGCTCTGTGAATGGTTTCTATCCAGGCAGCATTGAAGTCAGGTGGTTCCGGAACGGC CAGGAAGAGAAGACTGGGGTGGTGTCCACAGGCCTGATCCAGAATGGAGACTGGACCTTC CAGACCCTGGTGATGCTGGAAACAGTTCCTCGGAGTGGAGAGGTTTACACCTGCCAAGTG GAGCACCCAAGCCTGACGAGCCCTCTCACAGTGGAATGGAGAGCACGGTCTGAATCTGCA CAGAGCAAGATGCTGAGTGGAGTCGGGGGCTTCGTGCTGGGCCTGCTCTTCCTTGGGGCC GGGCTGTTCATCTACTTCAGGAATCAGAAAGGTGAGGAGCCTTTGGTAGCTGGCTGTCTC CATACGCTTTTCTGGAGGAGGAACTATGGCTTTGCTGAAGTTGGTTCTCAGCATATGAAT GGCCCTGGATAA >chr6_hla_hap2_6|geneid_v1.2_predicted_protein_6|304_AA TPEYLDCTVDLITLLGMVCLKFPGGSCMAALTVTLMVLSSPLALAGDTRPRFLEQVKHEC HFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAV DTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNG QEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTSPLTVEWRARSESA QSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGEEPLVAGCLHTLFWRRNYGFAEVGSQHMN GPG*