## date Tue Jul 27 21:02:01 2004 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence chr6_hla_hap1 - Length = 139182 bps # Optimal Gene Structure. 3 genes. Score = 59.25 # Gene 1 (Forward). 4 exons. 255 aa. Score = 16.91 First 4288 4369 1.95 + 0 1 4.55 4.45 5.12 0.00 AA 1: 28 chr6_hla_hap1_1 Internal 6782 7027 6.59 + 2 1 4.28 -0.05 23.88 0.00 AA 28:110 chr6_hla_hap1_1 Internal 7519 7800 6.89 + 2 1 3.91 1.17 22.11 0.00 AA 110:204 chr6_hla_hap1_1 Terminal 8090 8244 1.48 + 2 0 5.23 0.00 9.59 0.00 AA 204:255 chr6_hla_hap1_1 >chr6_hla_hap1_1|geneid_v1.2_predicted_cDNA_1|765_NN ATGGCCATAAGTGGAGTCCCTGTGCTAGGATTTTTCATCATAGCTGTGCTGATGAGCGCT CAGGAATCATGGGCTATCAAAGAAGAACATGTGATCATCCAGGCCGAGTTCTATCTGAAT CCTGACCAATCAGGCGAGTTTATGTTTGACTTTGATGGTGATGAGATTTTCCATGTGGAT ATGGCAAAGAAGGAGACGGTCTGGCGGCTTGAAGAATTTGGACGATTTGCCAGCTTTGAG GCTCAAGGTGCATTGGCCAACATAGCTGTGGACAAAGCCAACCTGGAAATCATGACAAAG CGCTCCAACTATACTCCGATCACCAATGTACCTCCAGAGGTAACTGTGCTCACGAACAGC CCTGTGGAACTGAGAGAGCCCAACGTCCTCATCTGTTTCATAGACAAGTTCACCCCACCA GTGGTCAATGTCACGTGGCTTCGAAATGGAAAACCTGTCACCACAGGAGTGTCAGAGACA GTCTTCCTGCCCAGGGAAGACCACCTTTTCCGCAAGTTCCACTATCTCCCCTTCCTGCCC TCAACTGAGGACGTTTACGACTGCAGGGTGGAGCACTGGGGCTTGGATGAGCCTCTTCTC AAGCACTGGGAGTTTGATGCTCCAAGCCCTCTCCCAGAGACTACAGAGAACGTGGTGTGT GCCCTGGGCCTGACTGTGGGTCTGGTGGGCATCATTATTGGGACCATCTTCATCATCAAG GGATTGCGCAAAAGCAATGCAGCAGAACGCAGGGGGCCTCTGTAA >chr6_hla_hap1_1|geneid_v1.2_predicted_protein_1|255_AA MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVD MAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNS PVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLP STEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFIIK GLRKSNAAERRGPL* # Gene 2 (Reverse). 10 exons. 548 aa. Score = 21.87 Terminal 9163 9209 -3.85 - 2 0 0.00 2.80 -0.08 0.00 AA 533:548 chr6_hla_hap1_2 Internal 24111 24418 5.58 - 1 1 3.70 2.48 17.17 0.00 AA 430:533 chr6_hla_hap1_2 Internal 49287 49579 -0.14 - 0 2 2.96 5.42 0.84 0.00 AA 333:430 chr6_hla_hap1_2 Internal 60610 60647 -0.92 - 2 0 0.87 6.66 0.15 0.00 AA 320:332 chr6_hla_hap1_2 Internal 61362 61385 0.53 - 2 1 2.59 6.61 0.01 0.00 AA 312:320 chr6_hla_hap1_2 Internal 61859 61969 1.36 - 2 1 4.53 2.57 5.24 0.00 AA 275:312 chr6_hla_hap1_2 Internal 62654 62935 3.46 - 2 1 -0.13 5.35 13.32 0.00 AA 181:275 chr6_hla_hap1_2 Internal 65210 65479 12.52 - 2 1 3.70 3.72 32.67 0.00 AA 91:181 chr6_hla_hap1_2 Internal 98846 99034 2.00 - 2 1 -2.93 6.70 13.09 0.00 AA 28: 91 chr6_hla_hap1_2 First 99755 99836 1.33 - 0 1 4.53 1.65 6.55 0.00 AA 1: 28 chr6_hla_hap1_2 >chr6_hla_hap1_2|geneid_v1.2_predicted_cDNA_2|1644_NN ATGCTGAGTGGAGTCGGGGGCTTCGTGCTGGGCCTGCTCTTCCTTGGGACGGGGCTGTTC ATCTACTTCAAGAATCAGAAAGTGCTCTCATCTGAGTCGTTGAAAGCGGGGAAAAGAAGT TTTAGTAAAGCCAGGTCTGAAAACAATTTCCTCTGTCTCCGCAGGACTCGAGCTGAAGTG CAGATGACCACATTCAAGGAAGAACCTTCTGCCCCAGCTTTGCAGGATGAAAAGCTTTCC CACTTGGCTGTTATTCTTCCACAAGAGCTTTCACGTTTCTTGGAGCTGCGTAAGTCTGAG TGTCATTTCTTCAATGGGACGGAGCGGGTGCGGTACCTGGACAGATACTTCCATAACCAG GAGGAGTTCCTGCGCTTCGACAGCGACGTGGGGGAGTACCGGGCGGTGACGGAGCTGGGG CGGCCTGTCGCCGAGTCCTGGAACAGCCAGAAGGACCTCCTGGAGCAGAAGCGGGGCCGG GTGGACAATTACTGCAGACACAACTACGGGGTTGGTGAGAGCTTCACAGTGCAGCGGCGA GTCCATCCTCAGGTGACTGTGTATCCTGCAAAGACCCAGCCCCTGCAGCACCACAACCTC CTGGTCTGCTCTGTGAGTGGTTTCTATCCAGGCAGCATTGAAGTCAGGTGGTTCCGGAAC GGCCAGGAAGAGAAGGCTGGGGTGGTGTCCACGGGCCTGATCCAGAATGGAGACTGGACC TTCCAGACCCTGGTGATGCTAGAAACAGTTCCTCGGAGTGGAGAGGTTTACACTTGCCAA GTGGAGCACCCAAGCGTAACGAGCGCTCTCACAGTGGAATGGAGAGCACGGTCTGAATCT GCACAGAGCAAGATGCTGAGTGGAGTCGGGGGCTTTGTGCTGGGCCTGCTCTTCCTTGGG GCCGGGCTGTTCATCTACTTCAGGAATCAGAAAGGACACTCTGGACTTCAGCCAACAGTG TTCTCATCTGAGTCCTTCAAAGAGGGGGAAAGAAACGACCTGTGGTGTTGGCCCCTCTTC CTCATAAGTGAAGATGTACCCAGTGGCCTCCCCATTATCTACTTTCGTTTCTTTCTGAAG TCCAGTCTTTATAAAGCCTGTATCCCTGTAGCTTATGTAGGTTCTCTGACAAAAGTTATA CTTAGTGCTCTTTCTTTCTTATGGGGAAAAATCCGTGGAGCTGAAGCCAAGATCTTTAGT ACTTGGTATCACCCTACAGACAAAGAACATCTATGGGGTGTTCTTTGGTGCCTAAAGAAC TTAAGGCATCCTCTGAAAACCTGGCCCAGGATGCCGCCCAAGAAACCGGTTCTTCATGTC CCTGCGGCACATTTCTTGGAGCAGATTAAACACGAGTGCTATTTCTGCAATGGGACAGAG CGGATGCGGTTTGTGCAGAGACTCATCCACACCGGAAGGAGTATGCGCGCTTCCATAGGG ACGTCGGAAAGTTCCGGGCGGTGGCGGAGCTGGAGCGGAGAAGAGTCCAGGAATGCAAAC AGCCAGAAGAACCTCTTGGGCTGCTTGCGGGGTCTGTTGGACACCTACTGCAGACACAAC TACGGGGTTTTTGAGAGCTTCTCCATGCACAGGCGAGAGGCATTGCATGGTGATAATAAA ATGATAGGAAATAGAGGAAAATAG >chr6_hla_hap1_2|geneid_v1.2_predicted_protein_2|548_AA MLSGVGGFVLGLLFLGTGLFIYFKNQKVLSSESLKAGKRSFSKARSENNFLCLRRTRAEV QMTTFKEEPSAPALQDEKLSHLAVILPQELSRFLELRKSECHFFNGTERVRYLDRYFHNQ EEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTVQRR VHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT FQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGLLFLG AGLFIYFRNQKGHSGLQPTVFSSESFKEGERNDLWCWPLFLISEDVPSGLPIIYFRFFLK SSLYKACIPVAYVGSLTKVILSALSFLWGKIRGAEAKIFSTWYHPTDKEHLWGVLWCLKN LRHPLKTWPRMPPKKPVLHVPAAHFLEQIKHECYFCNGTERMRFVQRLIHTGRSMRASIG TSESSGRWRSWSGEESRNANSQKNLLGCLRGLLDTYCRHNYGVFESFSMHRREALHGDNK MIGNRGK* # Gene 3 (Reverse). 4 exons. 372 aa. Score = 20.48 Terminal 100692 100957 2.60 - 2 0 0.00 4.81 11.78 0.00 AA 284:372 chr6_hla_hap1_3 Internal 125879 125966 -1.20 - 0 1 4.53 -2.16 5.95 0.00 AA 255:284 chr6_hla_hap1_3 Internal 126557 126969 4.89 - 2 0 0.37 4.99 16.67 0.00 AA 117:254 chr6_hla_hap1_3 Internal 129200 129548 14.19 - 0 1 3.70 0.66 41.43 0.00 AA 1:117 chr6_hla_hap1_3 >chr6_hla_hap1_3|geneid_v1.2_predicted_cDNA_3|1116_NN GGAGCCCCGGATGGCGGCGTCACTGTCAGTGTCTTCTCAGGAGGCCGCCTGTGTGACTGG ATCGTTCGTGTCCCCACAGCACGTTTCTTGGAGTACTCTACGTCTGAGTGTCATTTCTTC AATGGGACGGAGCGGGTGCGGTACCTGGACAGATACTTCCATAACCAGGAGGAGAACGTG CGCTTCGACAGCGACGTGGGGGAGTTCCGGGCGGTGACGGAGCTGGGGCGGCCTGATGCC GAGTACTGGAACAGCCAGAAGGACCTCCTGGAGCAGAAGCGGGGCCGGGTGGACAACTAC TGCAGACACAACTACGGGGTTGTGGAGAGCTTCACAGTGCAGCGGCGAGTCCATCCTAAG GTGACTGTGTATCCTTCAAAGACCCAGCCCCTGCAGCACCATAACCTCCTGGTCTGTTCT GTGAGTGGTTTCTATCCAGGCAGCATTGAAGTCAGGTGGTTCCGGAATGGCCAGGAAGAG AAGACTGGGGTGGTGTCCACAGGCCTGATCCACAATGGAGACTGGACCTTCCAGACCCTG GTGATGCTGGAAACAGTTCCTCGGAGTGGAGAGGTTTACACCTGCCAAGTGGAGCACCCA AGCGTGACAAGCCCTCTCACAGTGGAATGGAGTGAGCAGCTTTCTGACTTCATAAATTTC TCACCCACCAAGAAGGGGACTGTGCTCATCCCTGAGTGTCAGGTTTCTCCTCTCCGACAT CCTATTTTCATTTGCTCCATGTTCTCATCTCCATCAGCACAGAGCAAGATGCTGAGTGGA GTCGGGGGCTTTGTGCTGGGCCTGCTCTTCCTTGGGGCCGGGCTGTTCATCTACTTCAGG AATCAGAAAGTCCAACCTAAGGGGACTATGTATCCTGCAAAGACCCAGCCCCTGCCTCAC AGCAACCTCCTGGTCTGCTGTGTGAGTGGTTTCTATCCAGGCAGCATTGAAGTCAGGTGG TTCCGGAATGGTCAGGAAGAGAAGGCTGCGGTGGTCTCCATAGGCCTGATCCAGAATGGA GACTGGACTTTCCAGACCCTGGTGATGCTGGAAACAGTTCCTCGGAGTGGAGGAGCATCC AAGCATGACGAGCCCTCTCACAGTGCAATGGAGTGA >chr6_hla_hap1_3|geneid_v1.2_predicted_protein_3|372_AA GAPDGGVTVSVFSGGRLCDWIVRVPTARFLEYSTSECHFFNGTERVRYLDRYFHNQEENV RFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRRVHPK VTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTL VMLETVPRSGEVYTCQVEHPSVTSPLTVEWSEQLSDFINFSPTKKGTVLIPECQVSPLRH PIFICSMFSSPSAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKVQPKGTMYPAKTQPLPH SNLLVCCVSGFYPGSIEVRWFRNGQEEKAAVVSIGLIQNGDWTFQTLVMLETVPRSGGAS KHDEPSHSAME*