## date Tue Jul 27 19:57:04 2004 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence chr22_random - Length = 257318 bps # Optimal Gene Structure. 6 genes. Score = 85.49 # Gene 1 (Forward). 4 exons. 319 aa. Score = 36.37 Internal 3511 3643 3.58 + 0 1 5.59 2.97 8.61 0.00 AA 1: 45 chr22_random_1 Internal 13713 13775 0.99 + 2 1 4.14 3.07 4.17 0.00 AA 45: 66 chr22_random_1 Internal 13963 14119 3.33 + 2 2 3.44 3.21 10.83 0.00 AA 66:118 chr22_random_1 Terminal 14709 15312 28.47 + 1 0 3.28 0.00 78.77 0.00 AA 118:319 chr22_random_1 >chr22_random_1|geneid_v1.2_predicted_cDNA_1|957_NN GTACAGCTGGATAACTTGCCAGGAATGAGTCTCGTGGCTGGGAAAGCACTTAGCTCTGCC CGGATGTCGGATGCAGTTCTCAGTCAGTCTTCGCTCATGGGCAGCCAGCAGTTTCAGGAT GGGGAAAATGAGGGTCCCCCACGGCCCTTCAGGATGAAAGCTGCGGTGCTGACCTTGGCC GTGCTCTTCCTGACGGGGAGCCAGGCTCGGCATTTCTGGCAGCAAGATGAACCCCCCCAG AGCCCCTGGGATCGAGTGAAGGACCTGGCCACTGTGTACGTGGATGTGCTCAAAGACAGC GGCAGAGACTATGTGTCCCAGTTTGAAGGCTCCGCCTTGGGAAAACAGCTAAACCTAAAG CTCCTTGACAACTGGGACAGCGTGACCTCCACCTTCAGCAAGCTGCGCGAACAGCTCGGC CCTGTGACCCAGGAGTTCTGGGATAACCTGGAAAAGGAGACAGAGGGCCTGAGGCAGGAG ATGAGCAAGGATCTGGAGGAGGTGAAGGCCAAGGTGCAGCCCTACCTGGACGACTTCCAG AAGAAGTGGCAGGAGGAGATGGAGCTCTACCGCCAGAAGGTGGAGCCGCTGCGCGCAGAG CTCCAAGAGGGCGCGCGCCAGAAGCTGCACGAGCTGCAAGAGAAGCTGAGCCCACTGGGC GAGGAGATGCGCGACCGCGCGCGCGCCCATGTGGACGCGCTGCGCACGCATCTGGCCCCC TACAGCGACGAGCTGCGCCAGCGCTTGGCCGCGCGCCTTGAGGCTCTCAAGGAGAACGGC GGCGCCAGACTGGCCGAGTACCACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAG AAGGCCAAGCCCGCGCTCGAGGACCTCCGCCAAGGCCTGCTGCCCGTGCTGGAGAGCTTC AAGGTCAGCTTCCTGAGCGCTCTCGAGGAGTACACTAAGAAGCTCAACACCCAGTGA >chr22_random_1|geneid_v1.2_predicted_protein_1|319_AA VQLDNLPGMSLVAGKALSSARMSDAVLSQSSLMGSQQFQDGENEGPPRPFRMKAAVLTLA VLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLK LLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQ KKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAP YSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESF KVSFLSALEEYTKKLNTQ* # Gene 2 (Reverse). 2 exons. 69 aa. Score = 0.92 Terminal 18237 18357 -0.67 - 1 0 0.00 2.07 7.73 0.00 AA 29: 69 chr22_random_2 First 20219 20304 1.59 - 0 2 0.84 1.01 13.70 0.00 AA 1: 29 chr22_random_2 >chr22_random_2|geneid_v1.2_predicted_cDNA_2|207_NN ATGCAGGGCTACATGAAGCACGCCACCAAGACCGCCAAGGATGCACTGAGCAGCGTGCAG GAGTCCCAGGTGGCCCAGCAGGCCAGGGGCTGGGTGACCGATGGCTTCAGTTCCCTGAAA GACTACTGGAGCACCGTTAAGGACAAGTTCTCTGAGTTCTGGGATTTGGACCCTGAGGTC AGACCAACTTCAGCCGTGGCTGCCTGA >chr22_random_2|geneid_v1.2_predicted_protein_2|69_AA MQGYMKHATKTAKDALSSVQESQVAQQARGWVTDGFSSLKDYWSTVKDKFSEFWDLDPEV RPTSAVAA* # Gene 3 (Forward). 2 exons. 60 aa. Score = 2.14 First 27917 27965 1.13 + 0 1 1.81 3.86 6.83 0.00 AA 1: 17 chr22_random_3 Terminal 28323 28453 1.00 + 2 0 2.39 0.00 11.43 0.00 AA 17: 60 chr22_random_3 >chr22_random_3|geneid_v1.2_predicted_cDNA_3|180_NN ATGTTCCTGAAGGCCGTGGTCCTGACCCTGGCCCTGGTGGCTGTCGCCGGAGCCAGGGCT GAGGTCAGTGCTGACCAGGTGGCCACAGTGATGTGGGACTACTTCAGCCAGCTGAGCAAC AATGCCAAGGAGGCCGTGGAACATCTCCAGAAATCTGAACTCACCCAGCAACTCAAGTAA >chr22_random_3|geneid_v1.2_predicted_protein_3|60_AA MFLKAVVLTLALVAVAGARAEVSADQVATVMWDYFSQLSNNAKEAVEHLQKSELTQQLK* # Gene 4 (Forward). 2 exons. 192 aa. Score = 25.44 First 29540 30100 27.62 + 0 0 2.35 -0.40 78.61 0.00 AA 1:187 chr22_random_4 Terminal 31761 31775 -2.18 + 0 0 3.76 0.00 1.42 0.00 AA 188:192 chr22_random_4 >chr22_random_4|geneid_v1.2_predicted_cDNA_4|576_NN ATGGAGAGAGTGCTGCGGGAGAACGCCGACAGCCTGCAGGCCTCGCTGAGGCCCCACGCC GACGAGCTCAAGGCCAAGATCGACCAGAACGTGGAGGAGCTCAAGGGACGCCTTACGCCC TACGCTGACGAATTCAAAGTCAAGATTGACCAGACCGTGGAGGAGCTGCGCCGCAGCCTG GCTCCCTATGCTCAGGACACGCAGGAGAAGCTCAACCACCAGCTTGAGGGCCTGACCTTC CAGATGAAGAAGAACGCCGAGGAGCTCAAGGCCAGGATCTCGGCCAGTGCCGAGGAGCTG CGGCAGAGGCTGGCGCCCTTGGCCGAGGACGTGCGTGGCAACCTGAGGGGCAACACCGAG GGGCTGCAGAAGTCACTGGCAGAGCTGGGTGGGCACCTGGACCAGCAGGTGGAGGAGTTC CGACGCCGGGTGGAGCCCTACGGGGAAAACTTCAACAAAGCCCTGGTGCAGCAGATGGAA CAGCTCAGGCAGAAACTGGGCCCCCATGCGGGGGACGTGGAAGGCCACTTGAGCTTCCTG GAGAAGGACCTGAGGGACAAGGCCACACTCTATTAA >chr22_random_4|geneid_v1.2_predicted_protein_4|192_AA MERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSL APYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTE GLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLGPHAGDVEGHLSFL EKDLRDKATLY* # Gene 5 (Forward). 7 exons. 404 aa. Score = 12.69 First 193112 193203 -0.80 + 0 2 3.38 1.75 2.81 0.00 AA 1: 31 chr22_random_5 Internal 197974 198151 1.77 + 1 0 2.20 0.86 13.59 0.00 AA 31: 90 chr22_random_5 Internal 203242 203339 -1.14 + 0 2 0.72 3.84 4.07 0.00 AA 91:123 chr22_random_5 Internal 205989 206044 2.02 + 1 1 3.06 4.87 6.91 0.00 AA 123:142 chr22_random_5 Internal 212973 213003 1.79 + 2 2 4.57 5.38 3.29 0.00 AA 142:152 chr22_random_5 Internal 236688 236762 0.03 + 1 2 2.58 4.95 2.53 0.00 AA 152:177 chr22_random_5 Terminal 239632 240313 9.01 + 1 0 -3.29 0.00 41.21 0.00 AA 177:404 chr22_random_5 >chr22_random_5|geneid_v1.2_predicted_cDNA_5|1212_NN ATGCACTTGACCCTGAGGACATCAGGTACCAGGCCCGCCAGCTCACACCATCATCGGAGC CGCAGCTGCAGTCTAGACGTGGTGCACCGGCAACAGGCTGTCCATTGCCAGGAAGAGGCT TGCACTGTTATTCTGCTGGAACATGGCACCAATCCAAACCTTAAGGATATCTACCGCAAC ACTGCTCTCCATTATGCTGTGTATAGTGAGAGCACCTCACTGGCAGAAAAACTGCATTTC CATGGTGCAAATATTGAAGCACTGGACAAGGTATTGTCAATATCCTTCTTAAGCAAAATA TTGATGTCTTCACTAAAGACGTGTGGACGAGATGCAGAAGATTACACTATTTCTCATCAT TTGACAAAAATTCAACAACAAATTTTGGAACGTAAAAAGAAGATACTTAAAAAGGAGAAA CGAGATGTTGAAATTTCTGATGAATCTGCAGTCAGATTAACCAAACAAAGAAAGATTGGG AAAATGTATCCTCAGCAATTTCCCAAGAAACTGAAGGAAGAGCACGATAGAAAAACAAAT GCTGCCCTTGTAAAGTATATAAAACTCAATGAGGAATTGATAACAAAAACAGCATTCTGG TATCAACAAGAGCTTAATGATGTCAAAGCTGAGAATACAAGGCTCAATTCCGAACTGTTG AAGGAAGAAGAAAGCAACAAAAGACTGGAAGCTGAAACTGAATCTTATCAGTCTAGACTG GCTGCTACTATAAGTAAACACAGTGAAAGTGTGAAAACAGAAAGAAACCTAAAACTTGCT TTAGAGAGAACGCAAGATGTTTCCGTACAAGTAAAAATGAGTTCTGATATTTCCGAAGTA GAAGATAAGAATGAGTTTCTTACTGAACAACTTTCTAAAACACAAAATAAATTCAATACC TTAAAAGATAAGTTCCGTAAGACAAGAGATACTCTCAGAAAAAAGTCATTGGCTTCAGAA ACTGTACAAAACGACCTAAGCCAAACACAGCAGCAAATAAAGGAAATGAAAGAGATGTAT CAAAATGCAGAAGCTAAAGTGGGTAATTCCACTGGAAAGTGGAGCTGTGTAGAAGAGAGG ATATGTCAATTCCAACATGAAAATCCGTGCATTGAACAGCAACTAGATGATGTTCATCAG AAAGAGTATCATAAAGAGATAGTAACTAATATCCAAAGAGGCTTTATTGAGAGTGGAAAG ACCTCGTGCTAG >chr22_random_5|geneid_v1.2_predicted_protein_5|404_AA MHLTLRTSGTRPASSHHHRSRSCSLDVVHRQQAVHCQEEACTVILLEHGTNPNLKDIYRN TALHYAVYSESTSLAEKLHFHGANIEALDKVLSISFLSKILMSSLKTCGRDAEDYTISHH LTKIQQQILERKKKILKKEKRDVEISDESAVRLTKQRKIGKMYPQQFPKKLKEEHDRKTN AALVKYIKLNEELITKTAFWYQQELNDVKAENTRLNSELLKEEESNKRLEAETESYQSRL AATISKHSESVKTERNLKLALERTQDVSVQVKMSSDISEVEDKNEFLTEQLSKTQNKFNT LKDKFRKTRDTLRKKSLASETVQNDLSQTQQQIKEMKEMYQNAEAKVGNSTGKWSCVEER ICQFQHENPCIEQQLDDVHQKEYHKEIVTNIQRGFIESGKTSC* # Gene 6 (Forward). 2 exons. 137 aa. Score = 7.95 First 249234 249344 -0.97 + 0 0 -0.38 3.31 6.92 0.00 AA 1: 37 chr22_random_6 Internal 256595 256894 8.92 + 0 0 1.85 6.29 23.83 0.00 AA 38:137 chr22_random_6 >chr22_random_6|geneid_v1.2_predicted_cDNA_6|411_NN ATGACAATAAATATGTTAAATGTATTTGGAAATGAAGACTTTGTTTGCCATGAAGACTTA AAAACAGATCAACTAAAAATGGATATTCTGATTAAGAAGCTAAAACAGAAGTTTGATGAT CTTATGGCAGAGGAGGAAGCTGTATCTTCAAAATGTGTCAATTTGTCTAAAGACAATCAA GTTATCCAACAGGAGTTATTATCTATGAAAAAAGTACAACAAGAATGTGAAAAACTTGAG GAGAATCAAAAGATGTTGGAAGAAGAAATATTAAATCTTAAGACACATATGGAAAACAGT ATGGTAGAACTTAGTAAACTACAAGAATATAAATCAGAGCTAGATGAAAGGGCAATGCAG GCAGTAGAAAAATTAAAAGAAATCCATTTACAGGTTACTTGTTTAAATCAG >chr22_random_6|geneid_v1.2_predicted_protein_6|137_AA MTINMLNVFGNEDFVCHEDLKTDQLKMDILIKKLKQKFDDLMAEEEAVSSKCVNLSKDNQ VIQQELLSMKKVQQECEKLEENQKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQ AVEKLKEIHLQVTCLNQ