## date Wed Sep 15 17:36:56 2004
## source-version: geneid v 1.2 -- geneid@imim.es
# Sequence chr6_hla_hap1 - Length = 139182 bps
# Optimal Gene Structure. 3 genes. Score = 220.23 
# Gene 1 (Forward). 4 exons. 255 aa. Score = 64.70 
   First     4288     4369	 3.69	+ 0 1	 4.55	 4.45	 5.12	-28.70	AA   1: 28 chr6_hla_hap1_1
Internal     6782     7027	31.51	+ 2 1	 4.28	-0.05	23.88	25.63	AA  28:110 chr6_hla_hap1_1
Internal     7519     7800	31.03	+ 2 1	 3.91	 1.17	22.11	26.51	AA 110:204 chr6_hla_hap1_1
Terminal     8090     8244	-1.53	+ 2 0	 5.23	 0.00	 9.59	-53.20	AA 204:255 chr6_hla_hap1_1

>chr6_hla_hap1_1|SGP_v1.0_predicted_cDNA_1|765_NN
ATGGCCATAAGTGGAGTCCCTGTGCTAGGATTTTTCATCATAGCTGTGCTGATGAGCGCT
CAGGAATCATGGGCTATCAAAGAAGAACATGTGATCATCCAGGCCGAGTTCTATCTGAAT
CCTGACCAATCAGGCGAGTTTATGTTTGACTTTGATGGTGATGAGATTTTCCATGTGGAT
ATGGCAAAGAAGGAGACGGTCTGGCGGCTTGAAGAATTTGGACGATTTGCCAGCTTTGAG
GCTCAAGGTGCATTGGCCAACATAGCTGTGGACAAAGCCAACCTGGAAATCATGACAAAG
CGCTCCAACTATACTCCGATCACCAATGTACCTCCAGAGGTAACTGTGCTCACGAACAGC
CCTGTGGAACTGAGAGAGCCCAACGTCCTCATCTGTTTCATAGACAAGTTCACCCCACCA
GTGGTCAATGTCACGTGGCTTCGAAATGGAAAACCTGTCACCACAGGAGTGTCAGAGACA
GTCTTCCTGCCCAGGGAAGACCACCTTTTCCGCAAGTTCCACTATCTCCCCTTCCTGCCC
TCAACTGAGGACGTTTACGACTGCAGGGTGGAGCACTGGGGCTTGGATGAGCCTCTTCTC
AAGCACTGGGAGTTTGATGCTCCAAGCCCTCTCCCAGAGACTACAGAGAACGTGGTGTGT
GCCCTGGGCCTGACTGTGGGTCTGGTGGGCATCATTATTGGGACCATCTTCATCATCAAG
GGATTGCGCAAAAGCAATGCAGCAGAACGCAGGGGGCCTCTGTAA

>chr6_hla_hap1_1|SGP_v1.0_predicted_protein_1|255_AA
MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVD
MAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNS
PVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLP
STEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFIIK
GLRKSNAAERRGPL*

# Gene 2 (Reverse). 5 exons. 192 aa. Score = 68.32 
Terminal    60554    60562	-1.98	- 0 0	 0.00	 6.58	 0.70	-2.10	AA 190:192 chr6_hla_hap1_2
Internal    61362    61385	 4.01	- 0 0	 2.59	 6.61	 2.67	-8.40	AA 182:189 chr6_hla_hap1_2
Internal    62745    62935	15.73	- 2 0	 0.63	 5.35	10.41	23.19	AA 118:181 chr6_hla_hap1_2
Internal    65210    65479	48.68	- 2 1	 3.70	 3.72	32.67	24.51	AA  28:118 chr6_hla_hap1_2
   First    99755    99836	 1.89	- 0 1	 4.53	 1.65	 6.55	-28.70	AA   1: 28 chr6_hla_hap1_2

>chr6_hla_hap1_2|SGP_v1.0_predicted_cDNA_2|576_NN
ATGCTGAGTGGAGTCGGGGGCTTCGTGCTGGGCCTGCTCTTCCTTGGGACGGGGCTGTTC
ATCTACTTCAAGAATCAGAAAGCACGTTTCTTGGAGCTGCGTAAGTCTGAGTGTCATTTC
TTCAATGGGACGGAGCGGGTGCGGTACCTGGACAGATACTTCCATAACCAGGAGGAGTTC
CTGCGCTTCGACAGCGACGTGGGGGAGTACCGGGCGGTGACGGAGCTGGGGCGGCCTGTC
GCCGAGTCCTGGAACAGCCAGAAGGACCTCCTGGAGCAGAAGCGGGGCCGGGTGGACAAT
TACTGCAGACACAACTACGGGGTTGGTGAGAGCTTCACAGTGCAGCGGCGAGTCCATCCT
CAGGTGACTGTGTATCCTGCAAAGACCCAGCCCCTGCAGCACCACAACCTCCTGGTCTGC
TCTGTGAGTGGTTTCTATCCAGGCAGCATTGAAGTCAGGTGGTTCCGGAACGGCCAGGAA
GAGAAGGCTGGGGTGGTGTCCACGGGCCTGATCCAGAATGGAGACTGGACCTTCCAGACC
CTGGACACTCTGGACTTCAGCCAACAGGATTCCTGA

>chr6_hla_hap1_2|SGP_v1.0_predicted_protein_2|192_AA
MLSGVGGFVLGLLFLGTGLFIYFKNQKARFLELRKSECHFFNGTERVRYLDRYFHNQEEF
LRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTVQRRVHP
QVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQT
LDTLDFSQQDS*

# Gene 3 (Reverse). 6 exons. 368 aa. Score = 87.20 
Terminal   100692   100957	12.49	- 2 0	 0.00	 4.81	11.78	 5.49	AA 280:368 chr6_hla_hap1_3
Internal   101648   101678	-8.00	- 0 1	 0.21	 4.71	-0.65	-10.85	AA 270:280 chr6_hla_hap1_3
Internal   125380   125403	 2.45	- 0 0	 1.80	 6.40	 2.64	-8.40	AA 262:269 chr6_hla_hap1_3
Internal   126557   126969	24.84	- 2 0	 0.37	 4.99	16.67	30.88	AA 124:261 chr6_hla_hap1_3
Internal   129200   129469	53.46	- 2 1	 3.70	 4.00	35.63	26.17	AA  34:124 chr6_hla_hap1_3
Internal   137464   137564	 1.96	- 1 1	 3.59	 3.87	 1.76	 3.95	AA   1: 34 chr6_hla_hap1_3

>chr6_hla_hap1_3|SGP_v1.0_predicted_cDNA_3|1105_NN
CATGGTGTGTCTGAGGCTCCCTGGAGGCTCCTGCATGGCAGTTCTGACAGTGACACTGAT
GGTGCTGAGCTCCCCACTGGCTTTGGCTGGGGACACCAGACCACGTTTCTTGGAGTACTC
TACGTCTGAGTGTCATTTCTTCAATGGGACGGAGCGGGTGCGGTACCTGGACAGATACTT
CCATAACCAGGAGGAGAACGTGCGCTTCGACAGCGACGTGGGGGAGTTCCGGGCGGTGAC
GGAGCTGGGGCGGCCTGATGCCGAGTACTGGAACAGCCAGAAGGACCTCCTGGAGCAGAA
GCGGGGCCGGGTGGACAACTACTGCAGACACAACTACGGGGTTGTGGAGAGCTTCACAGT
GCAGCGGCGAGTCCATCCTAAGGTGACTGTGTATCCTTCAAAGACCCAGCCCCTGCAGCA
CCATAACCTCCTGGTCTGTTCTGTGAGTGGTTTCTATCCAGGCAGCATTGAAGTCAGGTG
GTTCCGGAATGGCCAGGAAGAGAAGACTGGGGTGGTGTCCACAGGCCTGATCCACAATGG
AGACTGGACCTTCCAGACCCTGGTGATGCTGGAAACAGTTCCTCGGAGTGGAGAGGTTTA
CACCTGCCAAGTGGAGCACCCAAGCGTGACAAGCCCTCTCACAGTGGAATGGAGTGAGCA
GCTTTCTGACTTCATAAATTTCTCACCCACCAAGAAGGGGACTGTGCTCATCCCTGAGTG
TCAGGTTTCTCCTCTCCGACATCCTATTTTCATTTGCTCCATGTTCTCATCTCCATCAGC
ACAGGACACTCTGGACTTCAGCCAAGAGGGGCAGAACCATTTCTCTGGTGTTCTAAGGTT
CCAACCTAAGGGGACTATGTATCCTGCAAAGACCCAGCCCCTGCCTCACAGCAACCTCCT
GGTCTGCTGTGTGAGTGGTTTCTATCCAGGCAGCATTGAAGTCAGGTGGTTCCGGAATGG
TCAGGAAGAGAAGGCTGCGGTGGTCTCCATAGGCCTGATCCAGAATGGAGACTGGACTTT
CCAGACCCTGGTGATGCTGGAAACAGTTCCTCGGAGTGGAGGAGCATCCAAGCATGACGA
GCCCTCTCACAGTGCAATGGAGTGA

>chr6_hla_hap1_3|SGP_v1.0_predicted_protein_3|368_AA
cMVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRY
FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT
VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN
GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSEQLSDFINFSPTKKGTVLIPE
CQVSPLRHPIFICSMFSSPSAQDTLDFSQEGQNHFSGVLRFQPKGTMYPAKTQPLPHSNL
LVCCVSGFYPGSIEVRWFRNGQEEKAAVVSIGLIQNGDWTFQTLVMLETVPRSGGASKHD
EPSHSAME*