## date Thu Sep 9 20:55:26 2004 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence chr22_random - Length = 257318 bps # Optimal Gene Structure. 9 genes. Score = 357.56 # Gene 1 (Forward). 3 exons. 152 aa. Score = 23.48 Internal 1834 1997 7.09 + 2 0 4.41 0.02 7.28 12.61 AA 1: 55 chr22_random_1 Internal 3511 3643 14.64 + 0 1 5.59 2.97 8.61 9.90 AA 56:100 chr22_random_1 Terminal 4566 4723 1.75 + 2 0 4.90 0.00 3.64 7.06 AA 100:152 chr22_random_1 >chr22_random_1|SGP_v1.0_predicted_cDNA_1|455_NN AGCCTGTCATAGGGAACTGCATGGATAGAAGTTCTCCAGGACAAGCAGTGGAGCTGCCGG ATCACAATGGGCTCGGGTACCCAGCACGCCCCTCCGTCCATGAGCACCACAGGCCCCGGG CCCTCCAGAGACACCACACGATCCAGAACAGCGACGATGCTTATGTACAGCTGGATAACT TGCCAGGAATGAGTCTCGTGGCTGGGAAAGCACTTAGCTCTGCCCGGATGTCGGATGCAG TTCTCAGTCAGTCTTCGCTCATGGGCAGCCAGCAGTTTCAGGATGGGGAAAATGAGGAAT GTGGGGCAAGCCTGGGAGGTCATGAGCACCCAGACCTGAGTGATGGCAGCCAGCATTTAA ACTCCTCTTGCTATCCATCTACGTGTATTACAGACATTCTGCTCAGCTACAAGCACCCCG AAGTCTCCTTCAGCATGGAGCAGGCAGGCGTGTAA >chr22_random_1|SGP_v1.0_predicted_protein_1|152_AA agPVIGNCMDRSSPGQAVELPDHNGLGYPARPSVHEHHRPRALQRHHTIQNSDDAYVQLD NLPGMSLVAGKALSSARMSDAVLSQSSLMGSQQFQDGENEECGASLGGHEHPDLSDGSQH LNSSCYPSTCITDILLSYKHPEVSFSMEQAGV* # Gene 2 (Forward). 3 exons. 268 aa. Score = 119.66 First 13733 13775 -0.10 + 0 1 0.72 3.07 5.49 -15.05 AA 1: 15 chr22_random_2 Internal 13963 14119 13.72 + 2 2 3.44 3.21 10.83 1.57 AA 15: 67 chr22_random_2 Terminal 14709 15312 106.04 + 1 0 3.28 0.00 78.77 24.30 AA 67:268 chr22_random_2 >chr22_random_2|SGP_v1.0_predicted_cDNA_2|804_NN ATGAAAGCTGCGGTGCTGACCTTGGCCGTGCTCTTCCTGACGGGGAGCCAGGCTCGGCAT TTCTGGCAGCAAGATGAACCCCCCCAGAGCCCCTGGGATCGAGTGAAGGACCTGGCCACT GTGTACGTGGATGTGCTCAAAGACAGCGGCAGAGACTATGTGTCCCAGTTTGAAGGCTCC GCCTTGGGAAAACAGCTAAACCTAAAGCTCCTTGACAACTGGGACAGCGTGACCTCCACC TTCAGCAAGCTGCGCGAACAGCTCGGCCCTGTGACCCAGGAGTTCTGGGATAACCTGGAA AAGGAGACAGAGGGCCTGAGGCAGGAGATGAGCAAGGATCTGGAGGAGGTGAAGGCCAAG GTGCAGCCCTACCTGGACGACTTCCAGAAGAAGTGGCAGGAGGAGATGGAGCTCTACCGC CAGAAGGTGGAGCCGCTGCGCGCAGAGCTCCAAGAGGGCGCGCGCCAGAAGCTGCACGAG CTGCAAGAGAAGCTGAGCCCACTGGGCGAGGAGATGCGCGACCGCGCGCGCGCCCATGTG GACGCGCTGCGCACGCATCTGGCCCCCTACAGCGACGAGCTGCGCCAGCGCTTGGCCGCG CGCCTTGAGGCTCTCAAGGAGAACGGCGGCGCCAGACTGGCCGAGTACCACGCCAAGGCC ACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGCCCGCGCTCGAGGACCTCCGCCAA GGCCTGCTGCCCGTGCTGGAGAGCTTCAAGGTCAGCTTCCTGAGCGCTCTCGAGGAGTAC ACTAAGAAGCTCAACACCCAGTGA >chr22_random_2|SGP_v1.0_predicted_protein_2|268_AA MKAAVLTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGS ALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAK VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHV DALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQ GLLPVLESFKVSFLSALEEYTKKLNTQ* # Gene 3 (Reverse). 2 exons. 39 aa. Score = 1.50 Terminal 20042 20072 -3.84 - 1 0 0.00 5.52 0.84 -9.80 AA 29: 39 chr22_random_3 First 20219 20304 5.35 - 0 2 0.84 1.01 13.70 -30.10 AA 1: 29 chr22_random_3 >chr22_random_3|SGP_v1.0_predicted_cDNA_3|117_NN ATGCAGGGCTACATGAAGCACGCCACCAAGACCGCCAAGGATGCACTGAGCAGCGTGCAG GAGTCCCAGGTGGCCCAGCAGGCCAGGGCCTTTGTCAGGCTGCTGCGGGAGAGATGA >chr22_random_3|SGP_v1.0_predicted_protein_3|39_AA MQGYMKHATKTAKDALSSVQESQVAQQARAFVRLLRER* # Gene 4 (Forward). 2 exons. 60 aa. Score = 13.97 First 27917 27965 4.19 + 0 1 1.81 3.86 6.83 -17.15 AA 1: 17 chr22_random_4 Terminal 28323 28453 9.77 + 2 0 2.39 0.00 11.43 10.52 AA 17: 60 chr22_random_4 >chr22_random_4|SGP_v1.0_predicted_cDNA_4|180_NN ATGTTCCTGAAGGCCGTGGTCCTGACCCTGGCCCTGGTGGCTGTCGCCGGAGCCAGGGCT GAGGTCAGTGCTGACCAGGTGGCCACAGTGATGTGGGACTACTTCAGCCAGCTGAGCAAC AATGCCAAGGAGGCCGTGGAACATCTCCAGAAATCTGAACTCACCCAGCAACTCAAGTAA >chr22_random_4|SGP_v1.0_predicted_protein_4|60_AA MFLKAVVLTLALVAVAGARAEVSADQVATVMWDYFSQLSNNAKEAVEHLQKSELTQQLK* # Gene 5 (Forward). 2 exons. 192 aa. Score = 104.68 First 29540 30100 109.35 + 0 0 2.35 -0.40 78.61 48.15 AA 1:187 chr22_random_5 Terminal 31761 31775 -4.66 + 0 0 3.76 0.00 1.42 -4.20 AA 188:192 chr22_random_5 >chr22_random_5|SGP_v1.0_predicted_cDNA_5|576_NN ATGGAGAGAGTGCTGCGGGAGAACGCCGACAGCCTGCAGGCCTCGCTGAGGCCCCACGCC GACGAGCTCAAGGCCAAGATCGACCAGAACGTGGAGGAGCTCAAGGGACGCCTTACGCCC TACGCTGACGAATTCAAAGTCAAGATTGACCAGACCGTGGAGGAGCTGCGCCGCAGCCTG GCTCCCTATGCTCAGGACACGCAGGAGAAGCTCAACCACCAGCTTGAGGGCCTGACCTTC CAGATGAAGAAGAACGCCGAGGAGCTCAAGGCCAGGATCTCGGCCAGTGCCGAGGAGCTG CGGCAGAGGCTGGCGCCCTTGGCCGAGGACGTGCGTGGCAACCTGAGGGGCAACACCGAG GGGCTGCAGAAGTCACTGGCAGAGCTGGGTGGGCACCTGGACCAGCAGGTGGAGGAGTTC CGACGCCGGGTGGAGCCCTACGGGGAAAACTTCAACAAAGCCCTGGTGCAGCAGATGGAA CAGCTCAGGCAGAAACTGGGCCCCCATGCGGGGGACGTGGAAGGCCACTTGAGCTTCCTG GAGAAGGACCTGAGGGACAAGGCCACACTCTATTAA >chr22_random_5|SGP_v1.0_predicted_protein_5|192_AA MERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSL APYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTE GLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLGPHAGDVEGHLSFL EKDLRDKATLY* # Gene 6 (Reverse). 6 exons. 93 aa. Score = 3.37 Terminal 108474 108477 -4.46 - 1 0 0.00 5.35 0.00 -0.35 AA 92: 93 chr22_random_6 Internal 108532 108588 4.48 - 1 2 3.96 4.76 2.20 3.91 AA 73: 92 chr22_random_6 Internal 117119 117205 5.34 - 1 2 -0.56 4.78 7.61 5.26 AA 44: 73 chr22_random_6 Internal 118890 118936 -0.25 - 0 2 -0.84 3.21 5.79 3.85 AA 29: 44 chr22_random_6 Internal 124832 124869 4.27 - 2 0 3.84 5.61 1.53 1.90 AA 16: 28 chr22_random_6 First 126401 126446 -6.00 - 0 1 4.82 -4.26 2.83 4.15 AA 1: 16 chr22_random_6 >chr22_random_6|SGP_v1.0_predicted_cDNA_6|279_NN ATGTTTTGGGTTGATGCTGAATTAGGGAGTGATATTTACCTTGATGGTATCATAACTATT GTGGATTCAAAATATGGATTAAAACATTTAACAGAAGAGAAACCTGATGGCCTTATCAAT GAAGCTACTAGGCAAGTTGCTTTGGCAGATATCGTTCTCATTAATAAAACAGACTTGGTT CCAGAAGAAGATGTAAAGAAATTAAGAACAACAATTAGAGTTGATCTCTCTAATGTATTA GATCTTCATGCCTTTGATAGTCTCTCTGGAATAAGTTAA >chr22_random_6|SGP_v1.0_predicted_protein_6|93_AA MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIVLINKTDLV PEEDVKKLRTTIRVDLSNVLDLHAFDSLSGIS* # Gene 7 (Forward). 2 exons. 95 aa. Score = 3.21 First 148422 148535 -1.15 + 0 0 0.83 0.54 11.57 -39.90 AA 1: 38 chr22_random_7 Terminal 182449 182619 4.36 + 0 0 2.77 0.00 6.94 16.56 AA 39: 95 chr22_random_7 >chr22_random_7|SGP_v1.0_predicted_cDNA_7|285_NN ATGGCACAAGTTGCAGTTTCCACCCTGCCCATTGAAGATGAGGAGTCTGTTGAAGATGAT GAGTCCTTGGAGAGCAGGATGGTGGTGACATTCCTGCCAGCTCTCGAGTCCACGGTGCAG CACCGTTTTGAATTTGAATACCAGACCAAAGTGGATGGTGACATAATCCTTCATCTTTAT GACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATAGTGTGTTTACATTTGTTTTA CTGGATTCTGCTAACAAGAAACTGTTCCTGGGCAGAGATACATAA >chr22_random_7|SGP_v1.0_predicted_protein_7|95_AA MAQVAVSTLPIEDEESVEDDESLESRMVVTFLPALESTVQHRFEFEYQTKVDGDIILHLY DKGGIEQTICMLDSVFTFVLLDSANKKLFLGRDT* # Gene 8 (Forward). 6 exons. 363 aa. Score = 54.48 First 193112 193203 -5.00 + 0 2 3.38 1.75 2.81 -32.20 AA 1: 31 chr22_random_8 Internal 197974 198151 13.62 + 1 0 2.20 0.86 13.59 15.04 AA 31: 90 chr22_random_8 Internal 203290 203339 -5.86 + 0 2 -1.03 3.84 4.17 -17.50 AA 91:107 chr22_random_8 Internal 205989 206044 5.26 + 1 1 3.06 4.87 6.91 -19.60 AA 107:126 chr22_random_8 Internal 212973 213003 5.02 + 2 2 4.57 5.38 3.29 -10.85 AA 126:136 chr22_random_8 Terminal 239632 240313 41.44 + 1 0 -3.29 0.00 41.21 12.81 AA 136:363 chr22_random_8 >chr22_random_8|SGP_v1.0_predicted_cDNA_8|1089_NN ATGCACTTGACCCTGAGGACATCAGGTACCAGGCCCGCCAGCTCACACCATCATCGGAGC CGCAGCTGCAGTCTAGACGTGGTGCACCGGCAACAGGCTGTCCATTGCCAGGAAGAGGCT TGCACTGTTATTCTGCTGGAACATGGCACCAATCCAAACCTTAAGGATATCTACCGCAAC ACTGCTCTCCATTATGCTGTGTATAGTGAGAGCACCTCACTGGCAGAAAAACTGCATTTC CATGGTGCAAATATTGAAGCACTGGACAAGACGTGTGGACGAGATGCAGAAGATTACACT ATTTCTCATCATTTGACAAAAATTCAACAACAAATTTTGGAACGTAAAAAGAAGATACTT AAAAAGGAGAAACGAGATGTTGAAATTTCTGATGAATCTGCAGTCAGAAAAACAAATGCT GCCCTTGTAAAGTATATAAAACTCAATGAGGAATTGATAACAAAAACAGCATTCTGGTAT CAACAAGAGCTTAATGATGTCAAAGCTGAGAATACAAGGCTCAATTCCGAACTGTTGAAG GAAGAAGAAAGCAACAAAAGACTGGAAGCTGAAACTGAATCTTATCAGTCTAGACTGGCT GCTACTATAAGTAAACACAGTGAAAGTGTGAAAACAGAAAGAAACCTAAAACTTGCTTTA GAGAGAACGCAAGATGTTTCCGTACAAGTAAAAATGAGTTCTGATATTTCCGAAGTAGAA GATAAGAATGAGTTTCTTACTGAACAACTTTCTAAAACACAAAATAAATTCAATACCTTA AAAGATAAGTTCCGTAAGACAAGAGATACTCTCAGAAAAAAGTCATTGGCTTCAGAAACT GTACAAAACGACCTAAGCCAAACACAGCAGCAAATAAAGGAAATGAAAGAGATGTATCAA AATGCAGAAGCTAAAGTGGGTAATTCCACTGGAAAGTGGAGCTGTGTAGAAGAGAGGATA TGTCAATTCCAACATGAAAATCCGTGCATTGAACAGCAACTAGATGATGTTCATCAGAAA GAGTATCATAAAGAGATAGTAACTAATATCCAAAGAGGCTTTATTGAGAGTGGAAAGACC TCGTGCTAG >chr22_random_8|SGP_v1.0_predicted_protein_8|363_AA MHLTLRTSGTRPASSHHHRSRSCSLDVVHRQQAVHCQEEACTVILLEHGTNPNLKDIYRN TALHYAVYSESTSLAEKLHFHGANIEALDKTCGRDAEDYTISHHLTKIQQQILERKKKIL KKEKRDVEISDESAVRKTNAALVKYIKLNEELITKTAFWYQQELNDVKAENTRLNSELLK EEESNKRLEAETESYQSRLAATISKHSESVKTERNLKLALERTQDVSVQVKMSSDISEVE DKNEFLTEQLSKTQNKFNTLKDKFRKTRDTLRKKSLASETVQNDLSQTQQQIKEMKEMYQ NAEAKVGNSTGKWSCVEERICQFQHENPCIEQQLDDVHQKEYHKEIVTNIQRGFIESGKT SC* # Gene 9 (Forward). 2 exons. 137 aa. Score = 33.21 First 249234 249344 0.91 + 0 0 -0.38 3.31 6.92 -7.99 AA 1: 37 chr22_random_9 Internal 256595 256894 32.30 + 0 0 1.85 6.29 23.83 -1.03 AA 38:137 chr22_random_9 >chr22_random_9|SGP_v1.0_predicted_cDNA_9|411_NN ATGACAATAAATATGTTAAATGTATTTGGAAATGAAGACTTTGTTTGCCATGAAGACTTA AAAACAGATCAACTAAAAATGGATATTCTGATTAAGAAGCTAAAACAGAAGTTTGATGAT CTTATGGCAGAGGAGGAAGCTGTATCTTCAAAATGTGTCAATTTGTCTAAAGACAATCAA GTTATCCAACAGGAGTTATTATCTATGAAAAAAGTACAACAAGAATGTGAAAAACTTGAG GAGAATCAAAAGATGTTGGAAGAAGAAATATTAAATCTTAAGACACATATGGAAAACAGT ATGGTAGAACTTAGTAAACTACAAGAATATAAATCAGAGCTAGATGAAAGGGCAATGCAG GCAGTAGAAAAATTAAAAGAAATCCATTTACAGGTTACTTGTTTAAATCAG >chr22_random_9|SGP_v1.0_predicted_protein_9|137_AA MTINMLNVFGNEDFVCHEDLKTDQLKMDILIKKLKQKFDDLMAEEEAVSSKCVNLSKDNQ VIQQELLSMKKVQQECEKLEENQKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQ AVEKLKEIHLQVTCLNQ