## date Tue May 4 16:57:58 2004 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence chr5_random - Length = 143687 bps # Optimal Gene Structure. 3 genes. Score = 509.40 # Gene 1 (Reverse). 3 exons. 910 aa. Score = 461.92 Terminal 13848 16549 466.40 - 2 0 0.00 3.59 193.53 1095.91 AA 10:910 chr5_random_1 Internal 24377 24396 -3.77 - 1 1 2.81 4.61 -0.99 -6.00 AA 3: 10 chr5_random_1 First 26155 26162 -0.71 - 0 2 0.82 5.63 0.35 -2.40 AA 1: 3 chr5_random_1 >chr5_random_1|geneid_v1.2_predicted_cDNA_1|2730_NN ATGTGGGAGTACTCTTTGTTCTGGGTTGTGTCACATTTGAAGACGAGCACTGAGGATGAG GAACCAACTGAAGAATATGAAAATGTTGGAAATGCAGCATCTAAGTGGCCAAAAGTGGAG GATCCTATCCCTGAATCTAAGGTTGGTGACACATGTGTTTGGGATAGCAAGGTAGAGAAT CAACAGAAAAAGCCTGTGGAAAACAGGATGAAGGAGGACAAAAGCAGCATCAGGGAAGCA ATCAGCAAAGCCAAGAGTACAGCAAATATAAAGACAGAACAGGAAGGTGAGGCATCTGAG AAGAGCTTGCATCTGAGCCCACAGCATATCACACACCAGACTATGCCTATAGGACAGAGA GGCAGTGAGCAAGGCAAACGTGTGGAGAACATTAATGGAACCTCCTACCCTAGTCTACAG CAGAAAACCAATGCTGTTAAGAAATTACATAAATGTGATGAATGTGGGAAATCCTTCAAA TATAATTCCCGCCTTGTTCAACATAAAATTATGCACACTGGGGAAAAGCGCTATGAATGT GATGACTGTGGAGGGACTTTCCGGAGCAGCTCGAGCCTTCGGGTCCACAAACGGATCCAC ACTGGGGAGAAGCCGTACAAGTGTGAGGAATGTGGGAAAGCCTACATGTCCTACTCCAGC CTTATAAACCACAAAAGCACCCATTCTGGGGAGAAGAACTGTAAATGTGATGAATGTGGA AAATCCTTCAATTATAGCTCTGTTCTGGACCAGCATAAAAGGATCCACACTGGGGAGAAG CCCTATGAATGTGGTGAGTGTGGGAAGGCCTTCAGGAACAGCTCTGGGCTCAGAGTCCAC AAAAGGATCCACACGGGGGAGAAGCCCTATGAATGCGACATCTGTGGGAAAACCTTCAGT AACAGCTCTGGCCTTAGGGTCCATAAAAGGATCCACACAGGTGAGAAACCTTACGAATGT GATGAGTGTGGGAAGGCCTTCATTACTTGTAGAACACTTCTCAACCATAAAAGCATCCAC TTTGGAGATAAACCCTATAAATGTGATGAGTGTGAGAAATCTTTTAATTATAGCTCTCTT CTCATTCAGCATAAAGTCATCCACACTGGAGAGAAACCTTATGAATGTGATGAATGTGGG AAGGCTTTCAGGAACAGCTCAGGCCTCATAGTGCATAAAAGGATCCACACAGGAGAGAAA CCTTACAAGTGTGATGTCTGTGGCAAAGCATTCAGCTATAGCTCAGGCCTCGCAGTCCAT AAAAGCATTCACCCTGGGAAGAAAGCCCATGAATGTAAGGAGTGTGGGAAATCCTTTAGT TATAACTCACTACTTCTTCAACACAGAACTATTCATACCGGAGAGAGACCTTATGTATGT GATGTGTGTGGGAAAACGTTCAGAAACAATGCAGGCCTCAAAGTCCACAGGAGGCTCCAT ACTGGGGAAAAACCATATAAGTGTGATGTGTGTGGGAAAGCCTATATCTCACGCTCTAGC CTTAAAAATCACAAAGGAATCCACCTTGGGGAGAAGCCCTATAAATGTAGCTATTGTGAG AAATCCTTCAACTACAGCTCTGCCCTTGAACAGCATAAAAGGATTCATACCAGGGAAAAA CCCTTTGGGTGTGATGAGTGTGGTAAAGCTTTCAGAAATAATTCTGGCCTTAAAGTACAT AAACGAATCCACACTGGGGAACGACCTTACAAATGTGAAGAATGTGGGAAAGCATACATC TCTCTCTCGAGCCTTATAAATCATAAAAGTGTACACCCTGGGGAGAAGCCCTTTAAGTGT GACGAGTGTGAGAAGGCCTTCATCACATACCGAACCCTTACAAACCACAAAAAAGTTCAT CTTGGGGAGAAGCCCTACAAATGTGATGTGTGTGAGAAATCTTTTAATTACACATCGCTC CTTTCTCAGCACAGAAGGGTCCACACTAGAGAGAAACCCTATGAATGTGACAGGTGTGAG AAGGTCTTCAGAAACAACTCAAGCCTTAAAGTTCATAAAAGAATCCATACTGGGGAGAGG CCCTATGAATGTGATGTGTGTGGAAAAGCCTACATCTCACACTCAAGCCTTATTAACCAT AAGAGTACCCACCCTGGCAAGACACCCCATACATGTGATGAATGTGGAAAAGCTTTTTTC TCAAGCAGAACTCTTATAAGCCATAAAAGAGTCCATCTTGGGGAGAAACCCTTCAAGTGT GTTGAGTGTGGGAAATCTTTCAGTTACAGCTCTCTCCTTTCTCAGCACAAGAGGATCCAC ACAGGGGAGAAACCCTATGTGTGTGATAGGTGTGGGAAGGCCTTCAGGAACAGCTCAGGC CTCACAGTGCATAAAAGGATCCACACAGGTGAGAAACCCTATGAATGTGATGAGTGTGGG AAGGCATACATCTCACACTCAAGTCTTATCAATCATAAAAGTGTCCACCAGGGGAAGCAG CCCTATAATTGTGAGTGTGGGAAATCCTTCAATTATAGATCAGTCCTTGACCAGCACAAA AGGATCCACACTGGAAAGAAGCCATACCGATGTAATGAGTGTGGTAAGGCTTTTAATATC AGATCAAATCTCACCAAGCATAAAAGAACCCATACTGGAGAGGAATCTTTAAATGTGATA TATGTGGGAAGTTATAGTGGCACATCCCAGAAGAGAACCTATGAGGGAGGGAATGCCCTG GATGGGGGCAGGATGAGGATGCCTCTGTAG >chr5_random_1|geneid_v1.2_predicted_protein_1|910_AA MWEYSLFWVVSHLKTSTEDEEPTEEYENVGNAASKWPKVEDPIPESKVGDTCVWDSKVEN QQKKPVENRMKEDKSSIREAISKAKSTANIKTEQEGEASEKSLHLSPQHITHQTMPIGQR GSEQGKRVENINGTSYPSLQQKTNAVKKLHKCDECGKSFKYNSRLVQHKIMHTGEKRYEC DDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECG KSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFS NSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSL LIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLAVH KSIHPGKKAHECKECGKSFSYNSLLLQHRTIHTGERPYVCDVCGKTFRNNAGLKVHRRLH TGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREK PFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINHKSVHPGEKPFKC DECEKAFITYRTLTNHKKVHLGEKPYKCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCE KVFRNNSSLKVHKRIHTGERPYECDVCGKAYISHSSLINHKSTHPGKTPHTCDECGKAFF SSRTLISHKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYVCDRCGKAFRNSSG LTVHKRIHTGEKPYECDECGKAYISHSSLINHKSVHQGKQPYNCECGKSFNYRSVLDQHK RIHTGKKPYRCNECGKAFNIRSNLTKHKRTHTGEESLNVIYVGSYSGTSQKRTYEGGNAL DGGRMRMPL* # Gene 2 (Forward). 6 exons. 470 aa. Score = 27.60 First 64341 64389 -5.54 + 0 1 -0.47 5.38 0.96 -14.70 AA 1: 17 chr5_random_2 Internal 73615 73962 16.80 + 2 1 6.74 3.11 7.37 22.54 AA 17:133 chr5_random_2 Internal 76368 76643 10.57 + 2 1 5.53 4.55 9.77 -29.48 AA 133:225 chr5_random_2 Internal 113387 113407 2.60 + 2 1 4.93 3.39 2.33 -6.30 AA 225:232 chr5_random_2 Internal 114936 115523 10.70 + 2 1 1.13 1.41 23.74 -72.02 AA 232:428 chr5_random_2 Terminal 119751 119878 -7.52 + 2 0 3.93 0.00 4.49 -37.50 AA 428:470 chr5_random_2 >chr5_random_2|geneid_v1.2_predicted_cDNA_2|1410_NN ATGGCTCTCATGCTCAGTTTGGTTCTGAGTCTCCTCAAGCTGGGATCAGGGCAGTGGCAG GTGTTTGGGCCAGACAAGCCTGTCCAGGCCTTGGTGGGGGAGGACGCAGCATTCTCCTGT TTCCTGTCTCCTAAAACCAATGCAGAGGCCATGGAAGTGCGGTTCTTCAGGGGCCAGTTC TCTAGCGTGGTCCACCTCTACAGGGACGGGAAGGACCAGCCATTTATGCAGATGCCACAG TATCAAGGCAGGACAAAACTGGTGAAGGATTCTATTGCGGAGGGGCGCATCTCTCTGAGG CTGGAAAACATTACTGTGTTGGATGCTGGCCTCTATGGGTGCAGGATTAGTTCCCAGTCT TACTACCAGAAGGCCATCTGGGAGCTACAGGTGTCAGCACTGGGCTCAGTTCCTCTCATT TCCATCACGGGATATGTTGATAGAGACATCCAGCTACTCTGTCAGTCCTCGGGCTGGTTC CCCCGGCCCACAGCGAAGTGGAAAGGTCCACAAGGACAGGATTTGTCCACAGACTCCAGG ACAAACAGAGACATGCATGGCCTGTTTGATGTGGAGATCTCTCTGACCGTCCAAGAGAAC GCCGGGAGCATATCCTGTTCCATGCGGCATGCTCATCTGAGCCGAGAGGTGGAATCCAGG GTACAGATAGGAGGGAAAATCCAGGCGGAACTGGTGGAGGTGACTCTGGATCCAGAGACG GCTCACCCGAAGCTCTGCGTTTCTGATCTGAAAACTGTAACCGAGAGAAAAGCTCCCCAG GAGGTGCCTCACTCTGAGAAGAGATTTAAAAGGAAGAGTGTGGTGGCTTCTCAGAGTTTC CAAGCAGGGAAACATTACTGGGAGGTGGACGGAGGACACAATAAAAGGTGGCGCGTGGGA GTGTGCCGGGATGATGTGGACAGGAGGAAGGAGTACGTGACTTTGTCTCCCGATCATGGG TACTGGGTCCTCAGACTGAATGGAGAACATTTGTATTTCACATTAAATCCCCGTTTTATC AGCGTCTTCCCCAGGACCCCACCTACAAAAATAGGGGTCTTCCTGGACTATGAGTGTGGG ACCATCTCCTTCTTCAACATAAATGACCAGTCCCTTATTTATACCCTGACATGTCGGTTT GAAGGCTTATTGAGGCCCTACATTGAGTATCCGTCCTATAATGAGCAAAATGGAACTCCC ATAGTCATCTGCCCAGTCACCCAGGAATCAGAGAAAGAGGCCTCTTGGCAAAGGGCCTCT GCAATCCCAGAGACAAGCAACAGGAGTAATAAATACAAGCCCAGAAACTACCAGAAGCCA GGCATTAGAGATATGAGGATGGACTGCTGTGAACTGTCTAGGAACAAAATAGCTGAAAGG GCACTGTGGAAGAAGGTGTCAGAAAATTAA >chr5_random_2|geneid_v1.2_predicted_protein_2|470_AA MALMLSLVLSLLKLGSGQWQVFGPDKPVQALVGEDAAFSCFLSPKTNAEAMEVRFFRGQF SSVVHLYRDGKDQPFMQMPQYQGRTKLVKDSIAEGRISLRLENITVLDAGLYGCRISSQS YYQKAIWELQVSALGSVPLISITGYVDRDIQLLCQSSGWFPRPTAKWKGPQGQDLSTDSR TNRDMHGLFDVEISLTVQENAGSISCSMRHAHLSREVESRVQIGGKIQAELVEVTLDPET AHPKLCVSDLKTVTERKAPQEVPHSEKRFKRKSVVASQSFQAGKHYWEVDGGHNKRWRVG VCRDDVDRRKEYVTLSPDHGYWVLRLNGEHLYFTLNPRFISVFPRTPPTKIGVFLDYECG TISFFNINDQSLIYTLTCRFEGLLRPYIEYPSYNEQNGTPIVICPVTQESEKEASWQRAS AIPETSNRSNKYKPRNYQKPGIRDMRMDCCELSRNKIAERALWKKVSEN* # Gene 3 (Reverse). 2 exons. 161 aa. Score = 19.88 Terminal 132220 132483 18.79 - 0 0 0.00 2.77 16.94 20.40 AA 74:161 chr5_random_3 First 135567 135785 1.09 - 0 0 -2.22 3.95 9.25 -19.57 AA 1: 73 chr5_random_3 >chr5_random_3|geneid_v1.2_predicted_cDNA_3|483_NN ATGGTGGAGGCGGTGGATCTGGGCAAAGACCCCAACGGGCCCAACCATTCCTCGATTCTG TTCACCAGGGAGGACGGCAACTCTAGGTCCTTATACCTGCTGCCCAGCCCAGCCAAGCAG CTGCTGCACCACTCGGTGCAGGAACCCAGGCCACACCGCTGGCCCAGCCTGGGGACGCCT CCAGCAGCTTTGTTGTCTGCGCAGTGCGTCCCGGACCGCGGGTGGGAGCTTGCCATTAAG ATCATTCGGCAGTTAATGGAAAAATTTAACTTGGATCTACCAACAGTTACACAGGCCTTC TTAAAAAATAATGGTGAGTTGGAGGCTACTTCCTCCTTCTTAGCGGCTGGTCAGAGAGCT GATAGATACCCCATTTGGTCCCAACAAGGTGACATAGATCTGCAAAAAGATGATGAGGAT ACCAGAGATGCATTGGTCAAAAAACTTAGTGCTCAGAATGTAGCTTGGAGGATTGAGTTT TAA >chr5_random_3|geneid_v1.2_predicted_protein_3|161_AA MVEAVDLGKDPNGPNHSSILFTREDGNSRSLYLLPSPAKQLLHHSVQEPRPHRWPSLGTP PAALLSAQCVPDRGWELAIKIIRQLMEKFNLDLPTVTQAFLKNNGELEATSSFLAAGQRA DRYPIWSQQGDIDLQKDDEDTRDALVKKLSAQNVAWRIEF*