## date Tue Aug 26 20:51:51 2003 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr5_random - Length = 143687 bps # Optimal Gene Structure. 3 genes. Score = 86.461941 # Gene 1 (Reverse). 4 exons. 930 aa. Score = 72.283526 Internal 14015 16549 74.46 - 2 1 3.58 3.59 189.16 0.00 AA 85:930 chr5_random_1 Internal 23900 24050 0.09 - 0 1 0.76 4.06 6.73 0.00 AA 35: 85 chr5_random_1 Internal 26586 26649 -0.31 - 1 0 3.78 3.38 1.00 0.00 AA 13: 34 chr5_random_1 First 38091 38128 -1.96 - 0 2 1.70 0.66 4.07 0.00 AA 1: 13 chr5_random_1 >chr5_random_1|geneid_v1.1_predicted_cDNA_1|2788_NN ATGGCTACCGGGGAGCTAGACAATAGCATCAGCCACAGGCCCCCACTTCCGGGAACGTCC CCGCACCCACACCTGGCAATGAATCACGTGTTCAGGAACCAGGCCTTGGCGATAAAGCAT GAACAAGAAGCACGGAAGAGTGCCCAGAGGTTGTTGGTCGTATGTAGTTTGGAAGGAGTG GGTGGCGTTCTATGTTTGACGCTTTTGACTGATGTAACCAGGCTATTAGACTCATGCTGC GTGTTGAAAACTGTGTCACATTTGAAGACGAGCACTGAGGATGAGGAACCAACTGAAGAA TATGAAAATGTTGGAAATGCAGCATCTAAGTGGCCAAAAGTGGAGGATCCTATCCCTGAA TCTAAGGTTGGTGACACATGTGTTTGGGATAGCAAGGTAGAGAATCAACAGAAAAAGCCT GTGGAAAACAGGATGAAGGAGGACAAAAGCAGCATCAGGGAAGCAATCAGCAAAGCCAAG AGTACAGCAAATATAAAGACAGAACAGGAAGGTGAGGCATCTGAGAAGAGCTTGCATCTG AGCCCACAGCATATCACACACCAGACTATGCCTATAGGACAGAGAGGCAGTGAGCAAGGC AAACGTGTGGAGAACATTAATGGAACCTCCTACCCTAGTCTACAGCAGAAAACCAATGCT GTTAAGAAATTACATAAATGTGATGAATGTGGGAAATCCTTCAAATATAATTCCCGCCTT GTTCAACATAAAATTATGCACACTGGGGAAAAGCGCTATGAATGTGATGACTGTGGAGGG ACTTTCCGGAGCAGCTCGAGCCTTCGGGTCCACAAACGGATCCACACTGGGGAGAAGCCG TACAAGTGTGAGGAATGTGGGAAAGCCTACATGTCCTACTCCAGCCTTATAAACCACAAA AGCACCCATTCTGGGGAGAAGAACTGTAAATGTGATGAATGTGGAAAATCCTTCAATTAT AGCTCTGTTCTGGACCAGCATAAAAGGATCCACACTGGGGAGAAGCCCTATGAATGTGGT GAGTGTGGGAAGGCCTTCAGGAACAGCTCTGGGCTCAGAGTCCACAAAAGGATCCACACG GGGGAGAAGCCCTATGAATGCGACATCTGTGGGAAAACCTTCAGTAACAGCTCTGGCCTT AGGGTCCATAAAAGGATCCACACAGGTGAGAAACCTTACGAATGTGATGAGTGTGGGAAG GCCTTCATTACTTGTAGAACACTTCTCAACCATAAAAGCATCCACTTTGGAGATAAACCC TATAAATGTGATGAGTGTGAGAAATCTTTTAATTATAGCTCTCTTCTCATTCAGCATAAA GTCATCCACACTGGAGAGAAACCTTATGAATGTGATGAATGTGGGAAGGCTTTCAGGAAC AGCTCAGGCCTCATAGTGCATAAAAGGATCCACACAGGAGAGAAACCTTACAAGTGTGAT GTCTGTGGCAAAGCATTCAGCTATAGCTCAGGCCTCGCAGTCCATAAAAGCATTCACCCT GGGAAGAAAGCCCATGAATGTAAGGAGTGTGGGAAATCCTTTAGTTATAACTCACTACTT CTTCAACACAGAACTATTCATACCGGAGAGAGACCTTATGTATGTGATGTGTGTGGGAAA ACGTTCAGAAACAATGCAGGCCTCAAAGTCCACAGGAGGCTCCATACTGGGGAAAAACCA TATAAGTGTGATGTGTGTGGGAAAGCCTATATCTCACGCTCTAGCCTTAAAAATCACAAA GGAATCCACCTTGGGGAGAAGCCCTATAAATGTAGCTATTGTGAGAAATCCTTCAACTAC AGCTCTGCCCTTGAACAGCATAAAAGGATTCATACCAGGGAAAAACCCTTTGGGTGTGAT GAGTGTGGTAAAGCTTTCAGAAATAATTCTGGCCTTAAAGTACATAAACGAATCCACACT GGGGAACGACCTTACAAATGTGAAGAATGTGGGAAAGCATACATCTCTCTCTCGAGCCTT ATAAATCATAAAAGTGTACACCCTGGGGAGAAGCCCTTTAAGTGTGACGAGTGTGAGAAG GCCTTCATCACATACCGAACCCTTACAAACCACAAAAAAGTTCATCTTGGGGAGAAGCCC TACAAATGTGATGTGTGTGAGAAATCTTTTAATTACACATCGCTCCTTTCTCAGCACAGA AGGGTCCACACTAGAGAGAAACCCTATGAATGTGACAGGTGTGAGAAGGTCTTCAGAAAC AACTCAAGCCTTAAAGTTCATAAAAGAATCCATACTGGGGAGAGGCCCTATGAATGTGAT GTGTGTGGAAAAGCCTACATCTCACACTCAAGCCTTATTAACCATAAGAGTACCCACCCT GGCAAGACACCCCATACATGTGATGAATGTGGAAAAGCTTTTTTCTCAAGCAGAACTCTT ATAAGCCATAAAAGAGTCCATCTTGGGGAGAAACCCTTCAAGTGTGTTGAGTGTGGGAAA TCTTTCAGTTACAGCTCTCTCCTTTCTCAGCACAAGAGGATCCACACAGGGGAGAAACCC TATGTGTGTGATAGGTGTGGGAAGGCCTTCAGGAACAGCTCAGGCCTCACAGTGCATAAA AGGATCCACACAGGTGAGAAACCCTATGAATGTGATGAGTGTGGGAAGGCATACATCTCA CACTCAAGTCTTATCAATCATAAAAGTGTCCACCAGGGGAAGCAGCCCTATAATTGTGAG TGTGGGAAATCCTTCAATTATAGATCAGTCCTTGACCAGCACAAAAGGATCCACACTGGA AAGAAGCCATACCGATGTAATGAGTGTG >chr5_random_1|geneid_v1.1_predicted_protein_1|930_AA MATGELDNSISHRPPLPGTSPHPHLAMNHVFRNQALAIKHEQEARKSAQRLLVVCSLEGV GGVLCLTLLTDVTRLLDSCCVLKTVSHLKTSTEDEEPTEEYENVGNAASKWPKVEDPIPE SKVGDTCVWDSKVENQQKKPVENRMKEDKSSIREAISKAKSTANIKTEQEGEASEKSLHL SPQHITHQTMPIGQRGSEQGKRVENINGTSYPSLQQKTNAVKKLHKCDECGKSFKYNSRL VQHKIMHTGEKRYECDDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINHK STHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHT GEKPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKP YKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCD VCGKAFSYSSGLAVHKSIHPGKKAHECKECGKSFSYNSLLLQHRTIHTGERPYVCDVCGK TFRNNAGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNY SSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSL INHKSVHPGEKPFKCDECEKAFITYRTLTNHKKVHLGEKPYKCDVCEKSFNYTSLLSQHR RVHTREKPYECDRCEKVFRNNSSLKVHKRIHTGERPYECDVCGKAYISHSSLINHKSTHP GKTPHTCDECGKAFFSSRTLISHKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKP YVCDRCGKAFRNSSGLTVHKRIHTGEKPYECDECGKAYISHSSLINHKSVHQGKQPYNCE CGKSFNYRSVLDQHKRIHTGKKPYRCNECg # Gene 2 (Forward). 6 exons. 470 aa. Score = 11.240608 First 64341 64389 -2.17 + 0 1 -0.47 5.38 0.96 0.00 AA 1: 17 chr5_random_2 Internal 73615 73962 3.36 + 2 1 6.74 3.11 7.37 0.00 AA 17:133 chr5_random_2 Internal 76368 76643 4.46 + 2 1 5.53 4.55 9.77 0.00 AA 133:225 chr5_random_2 Internal 113387 113407 0.92 + 2 1 4.93 3.39 2.33 0.00 AA 225:232 chr5_random_2 Internal 114936 115523 6.02 + 2 1 1.13 1.41 23.74 0.00 AA 232:428 chr5_random_2 Terminal 119751 119878 -1.35 + 2 0 3.93 0.00 4.49 0.00 AA 428:470 chr5_random_2 >chr5_random_2|geneid_v1.1_predicted_cDNA_2|1410_NN ATGGCTCTCATGCTCAGTTTGGTTCTGAGTCTCCTCAAGCTGGGATCAGGGCAGTGGCAG GTGTTTGGGCCAGACAAGCCTGTCCAGGCCTTGGTGGGGGAGGACGCAGCATTCTCCTGT TTCCTGTCTCCTAAAACCAATGCAGAGGCCATGGAAGTGCGGTTCTTCAGGGGCCAGTTC TCTAGCGTGGTCCACCTCTACAGGGACGGGAAGGACCAGCCATTTATGCAGATGCCACAG TATCAAGGCAGGACAAAACTGGTGAAGGATTCTATTGCGGAGGGGCGCATCTCTCTGAGG CTGGAAAACATTACTGTGTTGGATGCTGGCCTCTATGGGTGCAGGATTAGTTCCCAGTCT TACTACCAGAAGGCCATCTGGGAGCTACAGGTGTCAGCACTGGGCTCAGTTCCTCTCATT TCCATCACGGGATATGTTGATAGAGACATCCAGCTACTCTGTCAGTCCTCGGGCTGGTTC CCCCGGCCCACAGCGAAGTGGAAAGGTCCACAAGGACAGGATTTGTCCACAGACTCCAGG ACAAACAGAGACATGCATGGCCTGTTTGATGTGGAGATCTCTCTGACCGTCCAAGAGAAC GCCGGGAGCATATCCTGTTCCATGCGGCATGCTCATCTGAGCCGAGAGGTGGAATCCAGG GTACAGATAGGAGGGAAAATCCAGGCGGAACTGGTGGAGGTGACTCTGGATCCAGAGACG GCTCACCCGAAGCTCTGCGTTTCTGATCTGAAAACTGTAACCGAGAGAAAAGCTCCCCAG GAGGTGCCTCACTCTGAGAAGAGATTTAAAAGGAAGAGTGTGGTGGCTTCTCAGAGTTTC CAAGCAGGGAAACATTACTGGGAGGTGGACGGAGGACACAATAAAAGGTGGCGCGTGGGA GTGTGCCGGGATGATGTGGACAGGAGGAAGGAGTACGTGACTTTGTCTCCCGATCATGGG TACTGGGTCCTCAGACTGAATGGAGAACATTTGTATTTCACATTAAATCCCCGTTTTATC AGCGTCTTCCCCAGGACCCCACCTACAAAAATAGGGGTCTTCCTGGACTATGAGTGTGGG ACCATCTCCTTCTTCAACATAAATGACCAGTCCCTTATTTATACCCTGACATGTCGGTTT GAAGGCTTATTGAGGCCCTACATTGAGTATCCGTCCTATAATGAGCAAAATGGAACTCCC ATAGTCATCTGCCCAGTCACCCAGGAATCAGAGAAAGAGGCCTCTTGGCAAAGGGCCTCT GCAATCCCAGAGACAAGCAACAGGAGTAATAAATACAAGCCCAGAAACTACCAGAAGCCA GGCATTAGAGATATGAGGATGGACTGCTGTGAACTGTCTAGGAACAAAATAGCTGAAAGG GCACTGTGGAAGAAGGTGTCAGAAAATTAA >chr5_random_2|geneid_v1.1_predicted_protein_2|470_AA MALMLSLVLSLLKLGSGQWQVFGPDKPVQALVGEDAAFSCFLSPKTNAEAMEVRFFRGQF SSVVHLYRDGKDQPFMQMPQYQGRTKLVKDSIAEGRISLRLENITVLDAGLYGCRISSQS YYQKAIWELQVSALGSVPLISITGYVDRDIQLLCQSSGWFPRPTAKWKGPQGQDLSTDSR TNRDMHGLFDVEISLTVQENAGSISCSMRHAHLSREVESRVQIGGKIQAELVEVTLDPET AHPKLCVSDLKTVTERKAPQEVPHSEKRFKRKSVVASQSFQAGKHYWEVDGGHNKRWRVG VCRDDVDRRKEYVTLSPDHGYWVLRLNGEHLYFTLNPRFISVFPRTPPTKIGVFLDYECG TISFFNINDQSLIYTLTCRFEGLLRPYIEYPSYNEQNGTPIVICPVTQESEKEASWQRAS AIPETSNRSNKYKPRNYQKPGIRDMRMDCCELSRNKIAERALWKKVSEN* # Gene 3 (Reverse). 1 exons. 88 aa. Score = 2.937807 Terminal 132220 132483 2.94 - 0 0 0.00 2.77 16.94 0.00 AA 1: 88 chr5_random_3 >chr5_random_3|geneid_v1.1_predicted_cDNA_3|264_NN GGGTGGGAGCTTGCCATTAAGATCATTCGGCAGTTAATGGAAAAATTTAACTTGGATCTA CCAACAGTTACACAGGCCTTCTTAAAAAATAATGGTGAGTTGGAGGCTACTTCCTCCTTC TTAGCGGCTGGTCAGAGAGCTGATAGATACCCCATTTGGTCCCAACAAGGTGACATAGAT CTGCAAAAAGATGATGAGGATACCAGAGATGCATTGGTCAAAAAACTTAGTGCTCAGAAT GTAGCTTGGAGGATTGAGTTTTAA >chr5_random_3|geneid_v1.1_predicted_protein_3|88_AA GWELAIKIIRQLMEKFNLDLPTVTQAFLKNNGELEATSSFLAAGQRADRYPIWSQQGDID LQKDDEDTRDALVKKLSAQNVAWRIEF*