## date Tue Aug 26 20:39:43 2003 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr4_random - Length = 648024 bps # Optimal Gene Structure. 6 genes. Score = 117.754748 # Gene 1 (Forward). 2 exons. 93 aa. Score = 1.799740 Internal 96557 96622 2.28 + 2 1 5.04 5.00 4.38 0.00 AA 1: 23 chr4_random_1 Terminal 134209 134420 -0.48 + 2 0 5.94 0.00 3.65 0.00 AA 23: 93 chr4_random_1 >chr4_random_1|geneid_v1.1_predicted_cDNA_1|278_NN GTCTTTCCTTCTTTAAGTCTGATACCATTAACACAGATGCTCACACTGGGGCCAGATCTG CATCTGCTGCAGTTGATGGAGTGAGGATGAGCAGAACCCTGCTTAAAGAGAGGGAGGCAA TAGGTGGTGGCTACATGCTCCTGGTAAGCCTCCTGAAGTCCCCAGGTTGGGAGGCATCTC AGGGCTCTTTTTTGTGGGTTGCATCTACGGAATCTCCATCAATGGATGTAGAGAAGTTTG AGTTTCATGGAGTCGAAGACCTGGGTTGGGCCACTTAG >chr4_random_1|geneid_v1.1_predicted_protein_1|93_AA gtLSFFKSDTINTDAHTGARSASAAVDGVRMSRTLLKEREAIGGGYMLLVSLLKSPGWEA SQGSFLWVASTESPSMDVEKFEFHGVEDLGWAT* # Gene 2 (Reverse). 4 exons. 284 aa. Score = 11.219098 Terminal 135675 136220 11.14 - 0 0 0.00 5.37 33.54 0.00 AA 103:284 chr4_random_2 Internal 140751 140987 2.50 - 0 0 0.58 3.89 13.29 0.00 AA 24:102 chr4_random_2 Internal 150032 150088 0.03 - 0 0 2.73 3.71 4.16 0.00 AA 5: 23 chr4_random_2 First 165638 165649 -2.44 - 0 0 6.11 -2.06 1.58 0.00 AA 1: 4 chr4_random_2 >chr4_random_2|geneid_v1.1_predicted_cDNA_2|852_NN ATGCCTTACAAGAACTATCTTGGTTGGCATCATCAGGCCCTGAGAGCACAGTGCATGTCA GCATCTAAGTATGAATATTCTTTGCCTGTGCATCCCCCACCTCTCCCATCACAGCCATCC TTGAAGCCTCAACAGCCAGGACTGAAACCTTTTCTCCAGTCTGCTGCTGCAACCACCAAC CAGGCCACAGCACTGAAAGAAGCACTTCAGCCTCCAATTCACCTGGGACATCTGCCCTTG CAGGAAGGAGAACTGCCTCTGGTTCAGCAGCAGGTGGCACCATCAGATAAGCCACCAAAG CCTGAGGGCGGGAGAGAAGACCCAATGGCCTATGGAGCCATGTTTCCAGGATTTGGAGGC ATGAGGCCCGGCTTTGAGGGAATGCCCCACAACCCAGCTATGGGCGGTGACTTCACTCTG GAATTTGACTCCCCAGTGGCTGCCACCAAAGGCCCTGAGAACGAAGAAGGAGGTGCACAA GGCTCCCCTATGCCGGAGGCCAACCCAGACAATCTAGAAAACCCAGCTTTCCTTACAGAG CTAGAACCTGCTCCCCACGCAGGGCTCCTTGCTCTCCCTAAGGATGACATTCCCGGCCTG CCAAGGAGCCCTTCAGGGAAGATGAAGGGACTCCCCAGCGTCACCCCAGCAGCTGCTGAC CCACTGATGACCCCTGAATTAGCTGATGTTTATAGGACCTACGATGCTGACATGACCACA TCCGTGGATTTCCAGGAAGAAGCAACCATGGATACCACGATGGCCCCAAACTCTCTGCAA ACATCCATGCCAGGAAACAAAGCCCAGGAGCCCGAGATGATGCATGACGCATGGCATTTC CAAGAGCCCTGA >chr4_random_2|geneid_v1.1_predicted_protein_2|284_AA MPYKNYLGWHHQALRAQCMSASKYEYSLPVHPPPLPSQPSLKPQQPGLKPFLQSAAATTN QATALKEALQPPIHLGHLPLQEGELPLVQQQVAPSDKPPKPEGGREDPMAYGAMFPGFGG MRPGFEGMPHNPAMGGDFTLEFDSPVAATKGPENEEGGAQGSPMPEANPDNLENPAFLTE LEPAPHAGLLALPKDDIPGLPRSPSGKMKGLPSVTPAAADPLMTPELADVYRTYDADMTT SVDFQEEATMDTTMAPNSLQTSMPGNKAQEPEMMHDAWHFQEP* # Gene 3 (Forward). 3 exons. 120 aa. Score = 13.611534 First 257002 257104 1.79 + 0 1 5.09 0.62 8.41 0.00 AA 1: 35 chr4_random_3 Internal 264444 264655 12.97 + 2 0 3.95 4.09 32.84 0.00 AA 35:105 chr4_random_3 Terminal 265367 265411 -1.15 + 0 0 6.99 0.00 0.40 0.00 AA 106:120 chr4_random_3 >chr4_random_3|geneid_v1.1_predicted_cDNA_3|360_NN ATGCGGATGCCCTTGGCTCTGGAGTTGTACAAAACACCGAAGCGGGAGAGCCTGCAGCAA GCAGCTGGGGGACCTGAGCCCATGGCTGCCCCACACCAGCAGGATTATGATTCCGATGCG ATGAGCAGCTCTTATGAGTCGTATGATGAAGAGGAGGAGGATGGGAAGGGGAAGAAAACC CGGCACCAGTGGCCCTCCGAGGAGGCCTCCATGGACCTGGTCAAGGACGCCAAAATCTGC GCCTTCCTGCTGCGGAAGAAGCGGTTCGGCCAGTGGACCAAGTTGCTCTGCGTCATCAAA GACACCAAACTGCTGATTAACCTTGGGGGAATCATTGCTCAAAATTATATCATTAATTAG >chr4_random_3|geneid_v1.1_predicted_protein_3|120_AA MRMPLALELYKTPKRESLQQAAGGPEPMAAPHQQDYDSDAMSSSYESYDEEEEDGKGKKT RHQWPSEEASMDLVKDAKICAFLLRKKRFGQWTKLLCVIKDTKLLINLGGIIAQNYIIN* # Gene 4 (Reverse). 4 exons. 1175 aa. Score = 56.558791 Terminal 438121 438697 13.48 - 1 0 0.00 2.98 42.99 0.00 AA 983:1175 chr4_random_4 Internal 445350 445733 2.69 - 1 2 1.61 5.13 10.37 0.00 AA 855:983 chr4_random_4 Internal 445824 445909 -1.22 - 0 2 3.24 3.09 1.19 0.00 AA 827:855 chr4_random_4 First 446694 449171 41.61 - 0 0 4.60 -3.20 115.68 0.00 AA 1:826 chr4_random_4 >chr4_random_4|geneid_v1.1_predicted_cDNA_4|3525_NN ATGAATGCTAAAATGCACTTTAGGTTTGTTTTTGCACTTCTGATAGTATCTTTCAACCAC GATGTACTGGGCAAGAATTTGAAATACAGGATTTATGAGGAACAGAGGGTTGGATCAGTA ATTGCAAGACTATCAGAGGATGTGGCTGATGTTTTATTGAAGCTTCCTAATCCTTCTACT GTTCGATTTCGAGCCATGCAGAGGGGAAATTCTCCTCTACTTGTAGTAAACGAGGATAAT GGGGAAATCAGCATAGGGGCTACAATTGACCGTGAACAACTGTGCCAGAAAAACTTGAAC TGTTCCATAGAGTTTGATGTGATCACTCTACCCACAGAGCATCTGCAGCTTTTCCATATT GAAGTTGAAGTGCTGGATATTAATGACAATTCTCCCCAGTTTTCAAGATCTCTCATACCT ATTGAGATATCTGAGAGTGCAGCAGTTGGGACTCGCATTCCCCTGGACAGTGCATTTGAT CCAGATGTTGGGGAAAATTCCCTCCACACATACTCGCTCTCTGCCAATGATTTTTTTAAT ATCGAGGTTCGGACCAGGACTGATGGAGCCAAGTATGCAGAACTCATAGTGGTCAGAGAG TTAGATCGGGAGCTGAAGTCAAGCTACGAGCTTCAGCTCACTGCCTCAGACATGGGAGTA CCTCAGAGGTCTGGCTCATCCATACTAAAAATAAGCATTTCAGACTCCAATGACAACAGC CCTGCTTTTGAGCAGCAATCTTATATAATACAACTCTTAGAAAACTCCCCGGTTGGCACT TTGCTCTTAGATCTGAATGCCACGGATCCAGATGAGGGCGCTAATGGGAAAATTGTATAT TCCTTCAGCAGTCATGTGTCTCCCAAAATTATGGAGACTTTTAAAATTGATTCTGAAAGA GGACATTTGACTCTTTTCAAGCAAGTGGATTATGAAATCACCAAATCCTATGAGATTGAT GTTCAGGCTCAAGATTTGGGTCCAAATTCAATCCCAGCCCATTGCAAAATTATAATTAAG GTTGTGGATGTTAATGACAATAAACCTGAAATTAACATCAACCTCATGTCCCCTGGAAAA GAAGAAATATCTTATATTTTTGAAGGGGATCCTATTGATACATTTGTTGCTTTGGTCAGA GTTCAGGACAAGGATTCTGGGCTGAATGGAGAAATAGTTTGTAAGCTTCATGGACATGGT CACTTTAAACTTCAGAAGACATATGAAAACAATTATTTAATCTTAACTAATGCCACACTG GATAGAGAAAAGAGATCTGAGTATAGTTTGACTGTAATCGCTGAGGACAGGGGGACACCC AGTCTCTCTACAGTGAAACATTTTACAGTTCAAATCAATGATATCAATGACAATCCACCC CACTTCCAGAGAAGCCGATATGAATTTGTAATTTCAGAAAATAACTCACCAGGGGCATAT ATCACCACTGTTACAGCCACAGATCCTGATCTTGGAGAAAATGGGCAAGTGACATACACC ATCTTGGAGAGTTTTATTCTAGGAAGTTCCATAACTACATATGTAACCATTGACCCATCT AATGGAGCCATCTATGCCCTCAGAATCTTTGATCATGAAGAAGTGAGTCAGATCACTTTT GTGGTAGAAGCAAGAGATGGAGGAAGCCCGAAGCAACTGGTAAGCAATACCACAGTTGTG CTCACCATCATTGACGAAAATGACAACGTTCCTGTGGTTATAGGGCCTGCATTGCGTAAT AATACGGCAGAAATCACCATTCCCAAAGGGGCTGAAAGTGGCTTTCATGTCACAAGAATA AGGGCAATTGACAGAGACTCTGGTGTGAATGCTGAACTCAGCTGCGCCATAGTAGCAGGT AATGAGGAGAATATCTTCATAATTGATCCACGATCATGTGACATCCATACCAACGTTAGC ATGGATTCTGTTCCCTACACAGAATGGGAGCTGTCAGTTATCATTCAGGACAAAGGCAAT CCTCAGCTACATACCAAAGTCCTTCTGAAGTGCATGATCTTTGAATATGCAGAGTCGGTG ACAAGTACAGCAATGACTTCAGTAAGCCAGGCATCCTTGGATGTCTCCATGATAATAATT ATTTCCTTAGGAGCAATTTGTGCAGTGTTGCTGGTTATTATGGTGCTATTTGCAACTAGG TGTAACCGCGAGAAGAAAGACACTAGATCCTATAACTGCAGGGTGGCCGAATCAACTTAC CAGCACCACCCAAAAAGGCCATCCCGGCAGATTCACAAAGGGGACATCACATTGGTGCCT ACCATAAATGGCACTCTGCCCATCAGATCTCATCACAGATCGTCTCCATCTTCATCTCCT ACCTTAGAAAGAGGGCAGATGGGCAGCCGGCAGAGTCACAACAGTCACCAGTCACTCAAC AGTTTGGTGACAATCTCATCAAACCACGTGCCAGAGAATTTCTCATTAGAACTCACCCAC GCCACTCCTGCTGTTGAGGTCTCTCAGCTTCTTTCAATGCTTCACCAGGGGCAATATCAG CCAAGACCAAGTTTTCGAGGAAACAAATATTCCAGGAGCTACAGATATGCCCTTCAAGAC ATGGACAAATTTAGCTTGAAAGACAGTGGCCGTGGTGACAGTGAGGCAGGAGACAGTGAT TATGATTTGGGGCGAGATTCTCCAATAGATAGGCTGTTGGGTGAAGGATTCAGCGACCTG TTTCTCACAGATGGAAGAATTCCAGCAGGTAAGAGGGTAGTGATAGAAAATCTTTATTTT CAGGTCTACCGTGACACCAGTAAAATGAAAAATTTCTCTCATGCTTATATTTCTTCTTTA TTTGTCCCTTGCACTAAAGTATTTATAATATGTTTTATAGTATGTTCATCACTGTTTAGT AATGAACAGAAACTGAAACATTTTAACACTGTTTTCTTAAATTTCATTAAGCGGTTGGAA GAGAACGAGAGTAACATGTTCATTCCAGGGGAAGAATTCCCAACGCAACCCCAGCAGCAG CATCCACATCAGAGTCTTGAGGATGACGCTCAGCCTGCAGATTCCGGTGAAAAGAAGAAG AGTTTTTCCACCTTTGGAAAGGACTCCCCAAACGATGAGGACACTGGGGATACCAGCACA TCATCTCTGCTCTCGGAAATGAGCAGTGTGTTCCAGCGTCTCTTACCGCCTTCCCTGGAC ACCTATTCTGAATGCAGTGAGGTGGATCGGTCCAACTCCCTGGAGCGCAGGAAGGGACCC TTGCCAGCCAAAACTGTGGGTTACCCACAGGGGGTAGCGGCATGGGCAGCCAGTACGCAT TTTCAAAATCCCACCACCAACTGTGGGCCGCCACTTGGAACTCACTCCAGTGTGCAGCCT TCTTCAAAATGGCTGCCAGCCATGGAGGAGATCCCTGAAAATTATGAGGAAGATGATTTT GACAATGTGCTCAACCACCTCAATGATGGGAAACACGAACTCATGGATGCCAGTGAACTG GTGGCAGAGATTAACAAACTGCTTCAAGATGTCCGCCAGAGCTAG >chr4_random_4|geneid_v1.1_predicted_protein_4|1175_AA MNAKMHFRFVFALLIVSFNHDVLGKNLKYRIYEEQRVGSVIARLSEDVADVLLKLPNPST VRFRAMQRGNSPLLVVNEDNGEISIGATIDREQLCQKNLNCSIEFDVITLPTEHLQLFHI EVEVLDINDNSPQFSRSLIPIEISESAAVGTRIPLDSAFDPDVGENSLHTYSLSANDFFN IEVRTRTDGAKYAELIVVRELDRELKSSYELQLTASDMGVPQRSGSSILKISISDSNDNS PAFEQQSYIIQLLENSPVGTLLLDLNATDPDEGANGKIVYSFSSHVSPKIMETFKIDSER GHLTLFKQVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPEININLMSPGK EEISYIFEGDPIDTFVALVRVQDKDSGLNGEIVCKLHGHGHFKLQKTYENNYLILTNATL DREKRSEYSLTVIAEDRGTPSLSTVKHFTVQINDINDNPPHFQRSRYEFVISENNSPGAY ITTVTATDPDLGENGQVTYTILESFILGSSITTYVTIDPSNGAIYALRIFDHEEVSQITF VVEARDGGSPKQLVSNTTVVLTIIDENDNVPVVIGPALRNNTAEITIPKGAESGFHVTRI RAIDRDSGVNAELSCAIVAGNEENIFIIDPRSCDIHTNVSMDSVPYTEWELSVIIQDKGN PQLHTKVLLKCMIFEYAESVTSTAMTSVSQASLDVSMIIIISLGAICAVLLVIMVLFATR CNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHRSSPSSSP TLERGQMGSRQSHNSHQSLNSLVTISSNHVPENFSLELTHATPAVEVSQLLSMLHQGQYQ PRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEGFSDL FLTDGRIPAGKRVVIENLYFQVYRDTSKMKNFSHAYISSLFVPCTKVFIICFIVCSSLFS NEQKLKHFNTVFLNFIKRLEENESNMFIPGEEFPTQPQQQHPHQSLEDDAQPADSGEKKK SFSTFGKDSPNDEDTGDTSTSSLLSEMSSVFQRLLPPSLDTYSECSEVDRSNSLERRKGP LPAKTVGYPQGVAAWAASTHFQNPTTNCGPPLGTHSSVQPSSKWLPAMEEIPENYEEDDF DNVLNHLNDGKHELMDASELVAEINKLLQDVRQS* # Gene 5 (Reverse). 12 exons. 525 aa. Score = 32.716773 Terminal 516040 516051 -2.08 - 0 0 0.00 5.80 -0.15 0.00 AA 522:525 chr4_random_5 Internal 517035 517286 1.85 - 0 0 6.11 6.57 -1.87 0.00 AA 438:521 chr4_random_5 Internal 526119 526289 1.54 - 0 0 3.72 -0.94 13.42 0.00 AA 381:437 chr4_random_5 Internal 526416 526569 2.25 - 1 0 2.73 0.48 14.56 0.00 AA 329:380 chr4_random_5 Internal 529737 529849 2.01 - 0 2 5.48 0.71 8.25 0.00 AA 292:329 chr4_random_5 Internal 531527 531604 2.54 - 0 0 5.44 3.62 6.52 0.00 AA 266:291 chr4_random_5 Internal 542576 542723 6.18 - 1 0 5.34 2.70 15.88 0.00 AA 216:265 chr4_random_5 Internal 549544 549668 1.16 - 0 2 1.35 5.15 6.90 0.00 AA 175:216 chr4_random_5 Internal 558234 558468 10.80 - 1 0 4.09 5.01 25.86 0.00 AA 96:174 chr4_random_5 Internal 562825 562992 7.71 - 1 2 0.35 4.63 24.31 0.00 AA 40: 96 chr4_random_5 Internal 578292 578404 -0.07 - 0 2 3.21 3.77 1.86 0.00 AA 3: 40 chr4_random_5 First 614869 614874 -1.18 - 0 0 1.04 4.65 1.01 0.00 AA 1: 2 chr4_random_5 >chr4_random_5|geneid_v1.1_predicted_cDNA_5|1575_NN ATGGCGGAGTATCTGCTGGGAGCCTACCTGTCGGGCTCTGTTCTAGACTCCCTACTGCCT GGAGCTGACTTTCCAGCTGGGGAGGCTGATGGACAAAGCCTGTCCCGTGGCGGGAAGAGA GAAATTTCGGCAGAGGCGGACCGGGAACCTCAGCAGCTGCAGAACTACTGGTCAGAAGTG CGCTACACGGTGCGCTGCATCTACCGCCAGGCAGGAACCCCGCTGGCAGATGACCAGGAC CAGTCTCTGGTGCCTGACAAGGAGGGAGTGAAGGAGCTCGTGGATAGGCTCTGCGAGAGG GACCCCTACCAGCTGTACCAGCGTCTGGAACAGCAAGCTCGAGAGTATGTGCTGGAGATG AAGGTCCGCCTGCTCCGGCAGCTGTCGGCTGCGGCCAAGGTGAAGGCACCATCTGGCCTG CAGGGCCCGCCGCAAGCGCACCAGTTCATCTCCCTCCTGCTTGAGGAGTACGGCGCCCTC TGCCAGGCCGCACGCTCCATCAGCACCTTCCTTGGCACTCTGGAAAATGAACACTTGAAA AAGTTCCAAGTGACGTGGGAACTGCATAATAAACACCTGTTTGAAAATCTGGTCTTTTCG GAGCCACTTCTTCAGAGCAACTTGCCCGCACTGGTGTCACAGATCAGGCTAGGAACCACC ACACACGACACCTGCAGTGAGGACACATACAGTACCTTGCTGCAGAGGTACCAGCGTTCC GAGGAGGAGCTGCGCAGAGTCGCCGAGGAGTGGCTGGAGTGCCAGAAGAGGATCGACGCC TATGTCGACGAGCAGATGACAATGAAAACCAAGCAGCGCATGTTAACAGAAGACTGGGAG CTTTTTAAACAAAGAAGATTCATTGAAGAACAGTTAACCAATAAGAAAGCAGTTACTGGC GAGAACAACTTCACAGACACCATGAGGCACATGTTATCGTCCCGGCTGAGCATGCCCGAC TGCCCCAACTGCAACTACAGGAGAAGTTGTAGTGATGATGAAGATGTTGCACCATTGTCA GCCAAATTTGCTGATATTTATCCATTGAGTAATTATGATGATACCGAGGTGGTGGCCAAC ATGAATGGAATCCACAGCGAATTGAATGGTGGCGGGGAAAACATGGCCCTGAAGGATGAG ATAAGCAGTACCAGCAGTAGTTCCTCAGAAGCTGATGATGAAGAAGCGGACGGCGAGAGT AGTGGGGAGCCCCCAGGGGCCCCGAAGGAAGATGGAGTGCTGGGAAGCAGGAGCCCCAGG ACAGAGGAGAGCAAAGCAGACAGTCCACCCCCATCCTACCCAACACAGCAGGCTGAACAA GCTCCAAACACTTGTGAATGTCATGTTTGTAAGCAGGAAGCTTCTGGACTGACACCATCT GCAATGACAGCCGGAGCCCTTCCTCCTGGCCATCAGTTCTTGAGCCCAGAGAAGCCCACA CACCCTGCACTGCACCTTTACCCTCACATCCATGGACATGTGCCTTTGCACACTGTTCCA CACCTGCCACGCCCTCTCATCCACCCCACCTTGTATGCAACGCCCCCCTTCACACACAGT AAGGGGTCACTGTGA >chr4_random_5|geneid_v1.1_predicted_protein_5|525_AA MAEYLLGAYLSGSVLDSLLPGADFPAGEADGQSLSRGGKREISAEADREPQQLQNYWSEV RYTVRCIYRQAGTPLADDQDQSLVPDKEGVKELVDRLCERDPYQLYQRLEQQAREYVLEM KVRLLRQLSAAAKVKAPSGLQGPPQAHQFISLLLEEYGALCQAARSISTFLGTLENEHLK KFQVTWELHNKHLFENLVFSEPLLQSNLPALVSQIRLGTTTHDTCSEDTYSTLLQRYQRS EEELRRVAEEWLECQKRIDAYVDEQMTMKTKQRMLTEDWELFKQRRFIEEQLTNKKAVTG ENNFTDTMRHMLSSRLSMPDCPNCNYRRSCSDDEDVAPLSAKFADIYPLSNYDDTEVVAN MNGIHSELNGGGENMALKDEISSTSSSSSEADDEEADGESSGEPPGAPKEDGVLGSRSPR TEESKADSPPPSYPTQQAEQAPNTCECHVCKQEASGLTPSAMTAGALPPGHQFLSPEKPT HPALHLYPHIHGHVPLHTVPHLPRPLIHPTLYATPPFTHSKGSL* # Gene 6 (Reverse). 1 exons. 50 aa. Score = 1.848813 Terminal 637333 637482 1.85 - 0 0 0.00 4.69 10.09 0.00 AA 1: 50 chr4_random_6 >chr4_random_6|geneid_v1.1_predicted_cDNA_6|150_NN ATCGTGCAGAATGGACGTCTCATCGTTTCCACAGAATGCGGCCATGTCTTCTGTAGCCAG TGCCTCCGTGATTCCCTGAAGAATGCTAATACTTGCCCAACTTGTAGGAAAAAGATCAAC CACAAACGGTACCACCCCATTTATATATGA >chr4_random_6|geneid_v1.1_predicted_protein_6|50_AA IVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI*