## date Fri Sep 5 16:12:14 2003 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr7_random - Length = 632637 bps # Optimal Gene Structure. 8 genes. Score = 804.281388 # Gene 1 (Reverse). 2 exons. 51 aa. Score = 14.322709 Internal 6673 6772 18.36 - 0 1 5.48 3.24 6.15 9.23 AA 18: 51 gene_1 First 8948 8998 -4.04 - 0 0 1.95 4.40 2.88 -5.10 AA 1: 17 gene_1 >chr7_random|SGP_v1.0_predicted_cDNA_1|151_NN ATGCGGACGCTGCTGCCTCCCGCGCTGCTGACCTGCTGGCTGCTCGCCCCCGTGAACAGC ATTCACCCAGAATGCCGATTTCATCTGGAAATACAGGAGGAAGAAACAAAATGTGCAGAG CTTCTGAGGTCTCAAACAGAAAAACACAAAG >chr7_random|SGP_v1.0_predicted_protein_1|51_AA MRTLLPPALLTCWLLAPVNSIHPECRFHLEIQEEETKCAELLRSQTEKHKg # Gene 2 (Forward). 2 exons. 212 aa. Score = 71.219130 First 98729 98913 11.56 + 0 2 0.54 2.60 8.02 8.81 AA 1: 62 gene_2 Terminal 98989 99439 59.66 + 1 0 2.46 0.00 22.81 36.68 AA 62:212 gene_2 >chr7_random|SGP_v1.0_predicted_cDNA_2|636_NN ATGGCGTCTGAGGTGCCTTGTGCCTCGGGCATACCCATCAAGAAAATAGGCCATCGAGGT GTTGATTCCTCAGGAGAGACAACCTATAGAAAGACGACCTCATCAGCCTTGAAATGTGCC ATCCAGTTGTGCATTACTCACACTGTGGGGAGCCTGGATCCCACACCAGAGCGTCATGTC CTCATTGAGTTTCCTTTCAAGACCTATACACCTGTTGCCTTCTGCTACTTTCAGGAGCTA TTTGGTATCTGCCCTGATGATGACTTGTACTCCCTCTGCAGTGAGCCACTGATTGAACTC AGTAGCTCTGGAGCTGATGGTTCCCTGTTACATGTGTCCATCCACAATGAATTCATTATT AAAACAGTCCAACATAAACAGGCGGAGTTTCTGCAGAAGCTGATTCCAGGATACCACATC GACCTCAACCAGAACTCTTGGACTTTGCTGCCTAAATTCTATGGACTGTGCTGTGTGAAG GCAGGTGGCAAGAACACGCAGATTGCGGTGATGAAGAATCTCTTACTAAGACTGGTCAAA ATGCATACCAAATATGACTTCAAAAGTTCAACCTACAAAGAGCAGGCTTCCCAGAAAGAG CAAGAGAAGCCTCTTCCCACATTTTCCCACATTTAA >chr7_random|SGP_v1.0_predicted_protein_2|212_AA MASEVPCASGIPIKKIGHRGVDSSGETTYRKTTSSALKCAIQLCITHTVGSLDPTPERHV LIEFPFKTYTPVAFCYFQELFGICPDDDLYSLCSEPLIELSSSGADGSLLHVSIHNEFII KTVQHKQAEFLQKLIPGYHIDLNQNSWTLLPKFYGLCCVKAGGKNTQIAVMKNLLLRLVK MHTKYDFKSSTYKEQASQKEQEKPLPTFSHI* # Gene 3 (Forward). 2 exons. 66 aa. Score = 51.310167 First 253191 253367 57.94 + 0 0 5.28 5.16 25.68 17.44 AA 1: 59 gene_3 Terminal 275308 275328 -6.63 + 0 0 6.36 0.00 -0.34 -1.80 AA 60: 66 gene_3 >chr7_random|SGP_v1.0_predicted_cDNA_3|198_NN ATGGCCTCCCCGCCCGCCTGCCCCTCGGAGGAGGACGAGAGCCTGAAGGGCTGTGAGCTG TACGTGCAGCTGCACGGGATCCAGCAGGTCCTCAAAGACTGTATCGTCCACCTCTGCATC TCCAAGCCCGAACGCCCCATGAAGTTCCTCCGGGAGCACTTCGAGAAGCTGGAGAAGCCC CAGGCATCAGGCCTCTGA >chr7_random|SGP_v1.0_predicted_protein_3|66_AA MASPPACPSEEDESLKGCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEKP QASGL* # Gene 4 (Reverse). 14 exons. 734 aa. Score = 413.451212 Terminal 338617 338712 17.46 - 0 0 0.00 2.10 14.72 7.61 AA 703:734 gene_4 Internal 341948 342118 37.53 - 0 0 4.53 5.22 12.12 17.65 AA 646:702 gene_4 Internal 370665 370774 12.83 - 2 0 -2.67 3.48 11.96 7.22 AA 609:645 gene_4 Internal 376147 376338 40.84 - 2 1 3.10 5.44 15.34 18.37 AA 545:609 gene_4 Internal 381129 381285 20.23 - 0 1 2.43 2.67 8.44 12.44 AA 493:545 gene_4 Internal 382093 382243 23.90 - 1 0 3.53 4.37 10.56 8.95 AA 442:492 gene_4 Internal 385673 385820 21.22 - 2 2 2.28 3.09 9.49 11.59 AA 393:442 gene_4 Internal 392317 392485 31.38 - 0 1 4.49 1.01 16.29 12.22 AA 337:393 gene_4 Internal 394395 394538 27.91 - 0 0 5.48 3.56 11.96 9.32 AA 289:336 gene_4 Internal 399297 399509 37.41 - 0 0 3.30 5.54 10.52 21.10 AA 218:288 gene_4 Internal 401470 401702 56.53 - 2 0 1.76 6.25 21.44 26.51 AA 140:217 gene_4 Internal 414826 414944 15.98 - 1 1 3.87 4.08 9.57 4.31 AA 100:140 gene_4 Internal 415348 415472 29.43 - 0 2 4.16 5.61 11.34 10.59 AA 59:100 gene_4 First 426444 426617 40.81 - 0 0 3.55 -1.08 20.36 19.66 AA 1: 58 gene_4 >chr7_random|SGP_v1.0_predicted_cDNA_4|2202_NN ATGCAGTCGGAGTCTCTGATCGGGCCCCTGATGCAGACCATCTCCCACCAGCACTGGAAG GTCCGTGTGGCCGCCATTGAAGCCACAGGCGCAGTGATCCATTTTGGCAACGGGAAGTCC GTGGACGACGTGCTTTCCCATTTTGCTCAGCGACTGTTTGATGACGTCCCGCAGGTCCGG CGGGCGGTGGCCTCCGTGGTGGGCGGCTGGCTGCTGTGTCTGCGTGACCGTTACTCCTTC TTCCACAAGCTCATCCCTCTGCTGCTCAGTAGCCTCAACGACGAGGTGCCTGAGGTCAGG CAGCTGGCTGCCAGCCTCTGGGAGGACGTTGGCCTGCAGTGGCAGAAGGAGAATGAGGAG GACCTGAAGGACAAGCTGGACTTTGCCCCTCCCACCCCACCCCATTACCCTCCACATGAG CGCCGCCCTGTGCTGGGCTGCCGGGAGCTCGTCTTCAGGAACCTCTCCAAGATCCTCCCT GCCCTGTGCCACGACATCACCGACTGGGTGGTGGGGACCCGAGTGAAGTCGGCACAGCTG CTCCCAGTGCTGCTGCTGCATGCCGAGGACCACGCCACGCAGCACCTGGAGGTCGTCCTC CGGACCCTGTTCCAGGCCTGCACCGACGAGGAGGCAGCCGTGGTCCAAAGTTGTACCAGA TCCGCAGAGCTCGTCGGGACGTTTGTCAGCCCTGAGGTGTTTCTGAAGCTGATCTTATCG ACGCTGAAGAAGACGCCCTCTGCCTCCGGCCTCCTGGTGCTGGCCTCCGCCATGCGGGGT TGCCCCCGAGAAGCCCTCCAGCCGCACCTGGCAGCCATCGCCACAGAGCTGGCACAGGCC CACATCTGCCAGGCATCTGAAAACGACCTCTACCTGGAGCGCCTGCTGCTGTGTGTGCAG GCTCTGGTGTCTGTGTGTCATGAGGACTGTGGCGTGGCCAGCCTGCAGCTCTTGGACGTG CTGCTGACAATAGTGGCCCTCGCAGGTGCTACCGGCCTGAGGGACAAGGCACAGGAGACG ATGGACTCACTGGCCATGGTGGAGGGTGTCAGCAGCTGCCAGGACCTCTACCGCAAGCAC ATTGGTCCCCTCCTGGAGCGGGTGACCGCGTCGCACCTTGACTGGACCGCACACTCGCCG GAGCTCCTGCAGTTCAGTGTCATCGTCGCACAGTCAGGCCCTGCCCTGGGAGAAGCCCTG CCACACGTCGTGCCCACGCTGAGGGCCTGTCTGCAGCCCTCCCAAGACCCGCAGATGCGC CTGAAGCTGTTCTCCATCCTGTCCACCGTGCTGCTCAGAGCCACGGACACCATCAACTCC CAGGGGCAGTTTCCCAGCTACCTCGAGACGGTGACAAAGGACATCCTGGCCCCCAATCTG CAGTGGCATGCGGGGAGGACAGCCGCGGCCATCCGCACGGCTGCCGTGTCCTGCCTCTGG GCGCTCACCAGCAGCGAGGTCCTGTCGGCAGAGCAGATACGGGACGTGCAGGAAACACTG ATGCCCCAGGTCCTGACCACCCTGGAGGAGGATTCGAAGATGACGCGACTGATCTCATGC CGTATTATCAACACGTTCTTAAAAACCTCGGGCGGCATGACGGATCCAGAGAAACTCATC AGGATTTATCCTGAACTCTTAAAACGCCTAGATGACGTGTCCAACGATGTGAGGATGGCA GCCGCCTCCACCTTGGTCACCTGGCTGCAGTGTGTCAAGGGTGCCAACGCAAAATCCTAC TATCAGAGCAGTGTCCAGTACCTGTACCGAGAGTTGCTGGTTCACCTTGACGATCCAGAG AGGGCCATCCAGGATGCAATTTTAGAGGTCCTCAAAGAGGGCAGCGGGCTGTTCCCAGAT CTCCTGGTGAGGGAGACGGAGGCCGTCATCCACAAGCACCGCTCGGCCACCTACTGCGAG CAGCTCCTGCAGCATGAAGAAAACAGGCAGATTTTGGCGCGGCAAAAGTCAAACTCACAG TCGGACTCCCATGATGAGGAGGTGTCGCCCACCCCCCCGAACCCTGTGGTGAAGGCCCGC CGCCGGCGAGGAGGCGTGAGTGCCGAGGTGTACACCGAGGAGGACGCCGTGTCCTACGTC AGGAAGGTGATTCCCAAGGACTACAAAACCATGACTGCGCTGGCCAAGGCCATCTCCAAG AACGTGCTCTTCGCTCACCTGGATGACAACGAGAGGAGGTAG >chr7_random|SGP_v1.0_predicted_protein_4|734_AA MQSESLIGPLMQTISHQHWKVRVAAIEATGAVIHFGNGKSVDDVLSHFAQRLFDDVPQVR RAVASVVGGWLLCLRDRYSFFHKLIPLLLSSLNDEVPEVRQLAASLWEDVGLQWQKENEE DLKDKLDFAPPTPPHYPPHERRPVLGCRELVFRNLSKILPALCHDITDWVVGTRVKSAQL LPVLLLHAEDHATQHLEVVLRTLFQACTDEEAAVVQSCTRSAELVGTFVSPEVFLKLILS TLKKTPSASGLLVLASAMRGCPREALQPHLAAIATELAQAHICQASENDLYLERLLLCVQ ALVSVCHEDCGVASLQLLDVLLTIVALAGATGLRDKAQETMDSLAMVEGVSSCQDLYRKH IGPLLERVTASHLDWTAHSPELLQFSVIVAQSGPALGEALPHVVPTLRACLQPSQDPQMR LKLFSILSTVLLRATDTINSQGQFPSYLETVTKDILAPNLQWHAGRTAAAIRTAAVSCLW ALTSSEVLSAEQIRDVQETLMPQVLTTLEEDSKMTRLISCRIINTFLKTSGGMTDPEKLI RIYPELLKRLDDVSNDVRMAAASTLVTWLQCVKGANAKSYYQSSVQYLYRELLVHLDDPE RAIQDAILEVLKEGSGLFPDLLVRETEAVIHKHRSATYCEQLLQHEENRQILARQKSNSQ SDSHDEEVSPTPPNPVVKARRRRGGVSAEVYTEEDAVSYVRKVIPKDYKTMTALAKAISK NVLFAHLDDNERR* # Gene 5 (Forward). 5 exons. 161 aa. Score = 54.570850 First 481445 481459 -0.29 + 0 0 1.90 6.29 1.32 -1.50 AA 1: 5 gene_5 Internal 490842 490938 23.95 + 0 1 4.71 2.47 10.73 9.86 AA 6: 38 gene_5 Internal 495877 495981 15.98 + 2 1 5.22 2.52 4.91 9.03 AA 38: 73 gene_5 Internal 497336 497445 11.59 + 2 0 3.08 2.12 6.21 8.71 AA 73:109 gene_5 Terminal 498918 499073 3.35 + 0 0 -2.59 0.00 11.51 5.49 AA 110:161 gene_5 >chr7_random|SGP_v1.0_predicted_cDNA_5|483_NN ATGAAGATAACCCAGGAAGCCGAGATCCCCCGCGAGGTGATCGAGAGGCTGGCCCGCAGT CAGATCCACAGCATCCGGGACCTCCAGCGACTCCTGGAGATAGACTCCGTAGGGAGTGAG GATTCTTTGGACACCAGCCTGAGAGCTCACGGGGTCCATGCCACTAAGCATGTGCCCGAG AAGCGGCCCCTGCCCATTCGGAGGAAGAGAAGCATCGAGGAAGCTGTCCCCGCTGTCTGC AAGACCAGGACGGTCATTTACGAGATTCCTCGGAGTCAGGTCGACCCCACGTCCGCCAAC TTCCTGATCTGGCCCCCGTGCGTGGAGGAAGCTTCTTACTGCTTCACCGAGTGCTACAAT ACTTGCTTTGATGTCACATTAAACAAATGTGCACTGTCTCTTTGTTCTCCCGAGTGTTCT CGGACACAGTTTTTCACGGAGGAGAACAAAGACCGCACACTGGCAATAAAGCACCGTACA TAG >chr7_random|SGP_v1.0_predicted_protein_5|161_AA MKITQEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDSLDTSLRAHGVHATKHVPE KRPLPIRRKRSIEEAVPAVCKTRTVIYEIPRSQVDPTSANFLIWPPCVEEASYCFTECYN TCFDVTLNKCALSLCSPECSRTQFFTEENKDRTLAIKHRT* # Gene 6 (Reverse). 3 exons. 48 aa. Score = 7.221016 Terminal 499753 499760 -11.37 - 2 0 0.00 2.07 0.00 -0.50 AA 46: 48 gene_6 Internal 501688 501814 24.73 - 0 1 3.78 3.94 7.41 14.39 AA 4: 46 gene_6 First 518890 518898 -6.14 - 0 0 0.56 2.51 1.90 -0.90 AA 1: 3 gene_6 >chr7_random|SGP_v1.0_predicted_cDNA_6|144_NN ATGGCGCAGGTGGCCAAGGTGGAATACGTCAGGAAGAAGCCAAAATTAAAAGAAGTCCAG GTGAGGTTAGAGGAGCATTTGGAGTGCGCCTGCGCGACCACAAGCCTGAATCCGGATTAT CGGGAAGAGGACACGGAGCGTTAG >chr7_random|SGP_v1.0_predicted_protein_6|48_AA MAQVAKVEYVRKKPKLKEVQVRLEEHLECACATTSLNPDYREEDTER* # Gene 7 (Forward). 4 exons. 94 aa. Score = 48.997895 First 519508 519513 -2.59 + 0 0 3.68 1.92 1.48 -0.60 AA 1: 2 gene_7 Internal 531545 531605 16.82 + 0 1 5.41 1.77 10.05 3.66 AA 3: 23 gene_7 Internal 536736 536888 37.75 + 2 1 3.78 -0.55 15.11 25.64 AA 23: 74 gene_7 Terminal 550993 551054 -2.98 + 2 0 3.36 0.00 0.64 2.55 AA 74: 94 gene_7 >chr7_random|SGP_v1.0_predicted_cDNA_7|282_NN ATGCTGGGCAGCACGCTGAGGAAACGCAAGATGTACGAGGAGTTCCTCAGCAAGGTCTCC ATCCTAGAGTCCCTGGAGAAGTGGGAGCGTCTGACCGTGGCGGATGCGCTGGAGCCCGTC CAGTTTGAAGATGGAGAGAAAATTGTGGTCCAGGGAGAGCCTGGGGACGACTTTTACATC ATCACGGAGGTGAGACGTGCTTCCCACGTGGGCGCTCTGGACGGGGGCGGTCACATGCTT CTTTCTGGCCAGGAATCGAGTTTCACTTCCAGCCGCTATTAG >chr7_random|SGP_v1.0_predicted_protein_7|94_AA MLGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYI ITEVRRASHVGALDGGGHMLLSGQESSFTSSRY* # Gene 8 (Reverse). 5 exons. 174 aa. Score = 143.188409 Terminal 579001 579173 44.68 - 2 0 0.00 4.83 20.93 20.18 AA 117:174 gene_8 Internal 579960 580041 18.23 - 0 1 2.52 3.94 9.31 7.18 AA 90:117 gene_8 Internal 601669 601827 55.56 - 0 0 3.87 4.89 25.28 19.15 AA 37: 89 gene_8 Internal 611716 611762 12.37 - 2 0 1.77 5.85 7.09 3.12 AA 21: 36 gene_8 Internal 612914 612975 12.35 - 1 1 3.98 3.98 6.45 3.45 AA 1: 21 gene_8 >chr7_random|SGP_v1.0_predicted_cDNA_8|523_NN TGACATATTCGATGCCATGTTCCCTGTCACTCACATCGCTGGGGAGACTGTTATACAGCA AGGGAATGAAGGAGACAACTTCTATGTCGTTGATCAAGGGGAAGTGGATGTGTACGTGAA CGGAGAGTGGGTGACCAACATCAGCGAGGGAGGCAGCTTCGGGGAGCTGGCGCTCATCTA CGGCACCCCCAGGGCTGCGACCGTGAAAGCCAAGACGGACCTCAAGCTCTGGGGGATCGA CCGGGACAGCTACCGGCGCATCCTTATGGGCACCGCGTCCGTGCTGCAGCGCCGGTCCCC CAATGAGGAGTACGTGGAGGTGGGGCGCCTGGGACCCTCTGACTACTTCGGGGAGATTGC ACTGCTGCTGAACCGGCCCCGGGCGGCCACTGTCGTGGCCCGGGGGCCCCTCAAGTGTGT GAAGCTGGACCGGCCCCGCTTCGAGCGTGTGCTGGGGCCCTGCTCTGAGATCCTCAAGAG GAACATTCAGCGTTACAACAGCTTCATCTCCCTCACCGTCTGA >chr7_random|SGP_v1.0_predicted_protein_8|174_AA tDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVTNISEGGSFGELALI YGTPRAATVKAKTDLKLWGIDRDSYRRILMGTASVLQRRSPNEEYVEVGRLGPSDYFGEI ALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFISLTV*