## date Mon Sep 8 23:28:27 2003 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr5_random - Length = 143687 bps # Optimal Gene Structure. 3 genes. Score = 1156.888171 # Gene 1 (Reverse). 2 exons. 903 aa. Score = 1085.369325 Terminal 13848 16549 1092.63 - 2 0 0.00 3.59 193.37 836.67 AA 3:903 gene_1 First 40080 40086 -7.26 - 0 1 1.04 2.33 0.98 -0.70 AA 1: 3 gene_1 >chr5_random|SGP_v1.0_predicted_cDNA_1|2709_NN ATGGAGGTGTCACATTTGAAGACGAGCACTGAGGATGAGGAACCAACTGAAGAATATGAA AATGTTGGAAATGCAGCATCTAAGTGGCCAAAAGTGGAGGATCCTATCCCTGAATCTAAG GTTGGTGACACATGTGTTTGGGATAGCAAGGTAGAGAATCAACAGAAAAAGCCTGTGGAA AACAGGATGAAGGAGGACAAAAGCAGCATCAGGGAAGCAATCAGCAAAGCCAAGAGTACA GCAAATATAAAGACAGAACAGGAAGGTGAGGCATCTGAGAAGAGCTTGCATCTGAGCCCA CAGCATATCACACACCAGACTATGCCTATAGGACAGAGAGGCAGTGAGCAAGGCAAACGT GTGGAGAACATTAATGGAACCTCCTACCCTAGTCTACAGCAGAAAACCAATGCTGTTAAG AAATTACATAAATGTGATGAATGTGGGAAATCCTTCAAATATAATTCCCGCCTTGTTCAA CATAAAATTATGCACACTGGGGAAAAGCGCTATGAATGTGATGACTGTGGAGGGACTTTC CGGAGCAGCTCGAGCCTTCGGGTCCACAAACGGATCCACACTGGGGAGAAGCCGTACAAG TGTGAGGAATGTGGGAAAGCCTACATGTCCTACTCCAGCCTTATAAACCACAAAAGCACC CATTCTGGGGAGAAGAACTGTAAATGTGATGAATGTGGAAAATCCTTCAATTATAGCTCT GTTCTGGACCAGCATAAAAGGATCCACACTGGGGAGAAGCCCTATGAATGTGGTGAGTGT GGGAAGGCCTTCAGGAACAGCTCTGGGCTCAGAGTCCACAAAAGGATCCACACGGGGGAG AAGCCCTATGAATGCGACATCTGTGGGAAAACCTTCAGTAACAGCTCTGGCCTTAGGGTC CATAAAAGGATCCACACAGGTGAGAAACCTTACGAATGTGATGAGTGTGGGAAGGCCTTC ATTACTTGTAGAACACTTCTCAACCATAAAAGCATCCACTTTGGAGATAAACCCTATAAA TGTGATGAGTGTGAGAAATCTTTTAATTATAGCTCTCTTCTCATTCAGCATAAAGTCATC CACACTGGAGAGAAACCTTATGAATGTGATGAATGTGGGAAGGCTTTCAGGAACAGCTCA GGCCTCATAGTGCATAAAAGGATCCACACAGGAGAGAAACCTTACAAGTGTGATGTCTGT GGCAAAGCATTCAGCTATAGCTCAGGCCTCGCAGTCCATAAAAGCATTCACCCTGGGAAG AAAGCCCATGAATGTAAGGAGTGTGGGAAATCCTTTAGTTATAACTCACTACTTCTTCAA CACAGAACTATTCATACCGGAGAGAGACCTTATGTATGTGATGTGTGTGGGAAAACGTTC AGAAACAATGCAGGCCTCAAAGTCCACAGGAGGCTCCATACTGGGGAAAAACCATATAAG TGTGATGTGTGTGGGAAAGCCTATATCTCACGCTCTAGCCTTAAAAATCACAAAGGAATC CACCTTGGGGAGAAGCCCTATAAATGTAGCTATTGTGAGAAATCCTTCAACTACAGCTCT GCCCTTGAACAGCATAAAAGGATTCATACCAGGGAAAAACCCTTTGGGTGTGATGAGTGT GGTAAAGCTTTCAGAAATAATTCTGGCCTTAAAGTACATAAACGAATCCACACTGGGGAA CGACCTTACAAATGTGAAGAATGTGGGAAAGCATACATCTCTCTCTCGAGCCTTATAAAT CATAAAAGTGTACACCCTGGGGAGAAGCCCTTTAAGTGTGACGAGTGTGAGAAGGCCTTC ATCACATACCGAACCCTTACAAACCACAAAAAAGTTCATCTTGGGGAGAAGCCCTACAAA TGTGATGTGTGTGAGAAATCTTTTAATTACACATCGCTCCTTTCTCAGCACAGAAGGGTC CACACTAGAGAGAAACCCTATGAATGTGACAGGTGTGAGAAGGTCTTCAGAAACAACTCA AGCCTTAAAGTTCATAAAAGAATCCATACTGGGGAGAGGCCCTATGAATGTGATGTGTGT GGAAAAGCCTACATCTCACACTCAAGCCTTATTAACCATAAGAGTACCCACCCTGGCAAG ACACCCCATACATGTGATGAATGTGGAAAAGCTTTTTTCTCAAGCAGAACTCTTATAAGC CATAAAAGAGTCCATCTTGGGGAGAAACCCTTCAAGTGTGTTGAGTGTGGGAAATCTTTC AGTTACAGCTCTCTCCTTTCTCAGCACAAGAGGATCCACACAGGGGAGAAACCCTATGTG TGTGATAGGTGTGGGAAGGCCTTCAGGAACAGCTCAGGCCTCACAGTGCATAAAAGGATC CACACAGGTGAGAAACCCTATGAATGTGATGAGTGTGGGAAGGCATACATCTCACACTCA AGTCTTATCAATCATAAAAGTGTCCACCAGGGGAAGCAGCCCTATAATTGTGAGTGTGGG AAATCCTTCAATTATAGATCAGTCCTTGACCAGCACAAAAGGATCCACACTGGAAAGAAG CCATACCGATGTAATGAGTGTGGTAAGGCTTTTAATATCAGATCAAATCTCACCAAGCAT AAAAGAACCCATACTGGAGAGGAATCTTTAAATGTGATATATGTGGGAAGTTATAGTGGC ACATCCCAGAAGAGAACCTATGAGGGAGGGAATGCCCTGGATGGGGGCAGGATGAGGATG CCTCTGTAG >chr5_random|SGP_v1.0_predicted_protein_1|903_AA MEVSHLKTSTEDEEPTEEYENVGNAASKWPKVEDPIPESKVGDTCVWDSKVENQQKKPVE NRMKEDKSSIREAISKAKSTANIKTEQEGEASEKSLHLSPQHITHQTMPIGQRGSEQGKR VENINGTSYPSLQQKTNAVKKLHKCDECGKSFKYNSRLVQHKIMHTGEKRYECDDCGGTF RSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSS VLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFSNSSGLRV HKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVI HTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLAVHKSIHPGK KAHECKECGKSFSYNSLLLQHRTIHTGERPYVCDVCGKTFRNNAGLKVHRRLHTGEKPYK CDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREKPFGCDEC GKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINHKSVHPGEKPFKCDECEKAF ITYRTLTNHKKVHLGEKPYKCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCEKVFRNNS SLKVHKRIHTGERPYECDVCGKAYISHSSLINHKSTHPGKTPHTCDECGKAFFSSRTLIS HKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYVCDRCGKAFRNSSGLTVHKRI HTGEKPYECDECGKAYISHSSLINHKSVHQGKQPYNCECGKSFNYRSVLDQHKRIHTGKK PYRCNECGKAFNIRSNLTKHKRTHTGEESLNVIYVGSYSGTSQKRTYEGGNALDGGRMRM PL* # Gene 2 (Forward). 6 exons. 350 aa. Score = 33.992812 First 64341 64389 -9.69 + 0 1 -0.47 5.38 0.92 -4.90 AA 1: 17 gene_2 Internal 73615 73962 35.27 + 2 1 6.74 3.11 7.52 22.54 AA 17:133 gene_2 Internal 76368 76643 12.83 + 2 1 5.53 4.55 9.80 -1.38 AA 133:225 gene_2 Internal 110769 110853 -5.43 + 2 2 3.64 -3.76 3.09 3.02 AA 225:253 gene_2 Internal 115264 115523 11.97 + 1 1 1.56 1.41 13.55 2.90 AA 253:340 gene_2 Terminal 117770 117801 -10.96 + 2 0 2.90 0.00 1.13 -2.90 AA 340:350 gene_2 >chr5_random|SGP_v1.0_predicted_cDNA_2|1050_NN ATGGCTCTCATGCTCAGTTTGGTTCTGAGTCTCCTCAAGCTGGGATCAGGGCAGTGGCAG GTGTTTGGGCCAGACAAGCCTGTCCAGGCCTTGGTGGGGGAGGACGCAGCATTCTCCTGT TTCCTGTCTCCTAAAACCAATGCAGAGGCCATGGAAGTGCGGTTCTTCAGGGGCCAGTTC TCTAGCGTGGTCCACCTCTACAGGGACGGGAAGGACCAGCCATTTATGCAGATGCCACAG TATCAAGGCAGGACAAAACTGGTGAAGGATTCTATTGCGGAGGGGCGCATCTCTCTGAGG CTGGAAAACATTACTGTGTTGGATGCTGGCCTCTATGGGTGCAGGATTAGTTCCCAGTCT TACTACCAGAAGGCCATCTGGGAGCTACAGGTGTCAGCACTGGGCTCAGTTCCTCTCATT TCCATCACGGGATATGTTGATAGAGACATCCAGCTACTCTGTCAGTCCTCGGGCTGGTTC CCCCGGCCCACAGCGAAGTGGAAAGGTCCACAAGGACAGGATTTGTCCACAGACTCCAGG ACAAACAGAGACATGCATGGCCTGTTTGATGTGGAGATCTCTCTGACCGTCCAAGAGAAC GCCGGGAGCATATCCTGTTCCATGCGGCATGCTCATCTGAGCCGAGAGGTGGAATCCAGG GTACAGATAGGAGTTGCACTCCTGAGAGCAAGATGGGTCACCAGCAGCTGTACTGGAGCC ACTCATGAAAATTCGGTCAGGGTTCTTGCTCTTGTCGACGTCTTCCCCAGGACCCCACCT ACAAAAATAGGGGTCTTCCTGGACTATGAGTGTGGGACCATCTCCTTCTTCAACATAAAT GACCAGTCCCTTATTTATACCCTGACATGTCGGTTTGAAGGCTTATTGAGGCCCTACATT GAGTATCCGTCCTATAATGAGCAAAATGGAACTCCCATAGTCATCTGCCCAGTCACCCAG GAATCAGAGAAAGAGGCCTCTTGGCAAAGGGCCTCTGCAATCCCAGAGACAAGCAACATG CTGGTAGAGTGTGTCTTAAAGCAGCTGTAG >chr5_random|SGP_v1.0_predicted_protein_2|350_AA MALMLSLVLSLLKLGSGQWQVFGPDKPVQALVGEDAAFSCFLSPKTNAEAMEVRFFRGQF SSVVHLYRDGKDQPFMQMPQYQGRTKLVKDSIAEGRISLRLENITVLDAGLYGCRISSQS YYQKAIWELQVSALGSVPLISITGYVDRDIQLLCQSSGWFPRPTAKWKGPQGQDLSTDSR TNRDMHGLFDVEISLTVQENAGSISCSMRHAHLSREVESRVQIGVALLRARWVTSSCTGA THENSVRVLALVDVFPRTPPTKIGVFLDYECGTISFFNINDQSLIYTLTCRFEGLLRPYI EYPSYNEQNGTPIVICPVTQESEKEASWQRASAIPETSNMLVECVLKQL* # Gene 3 (Reverse). 2 exons. 161 aa. Score = 37.526034 Terminal 132220 132483 35.68 - 0 0 0.00 2.77 16.92 22.80 AA 74:161 gene_3 First 135567 135785 1.85 - 0 0 -2.22 3.95 9.26 -0.97 AA 1: 73 gene_3 >chr5_random|SGP_v1.0_predicted_cDNA_3|483_NN ATGGTGGAGGCGGTGGATCTGGGCAAAGACCCCAACGGGCCCAACCATTCCTCGATTCTG TTCACCAGGGAGGACGGCAACTCTAGGTCCTTATACCTGCTGCCCAGCCCAGCCAAGCAG CTGCTGCACCACTCGGTGCAGGAACCCAGGCCACACCGCTGGCCCAGCCTGGGGACGCCT CCAGCAGCTTTGTTGTCTGCGCAGTGCGTCCCGGACCGCGGGTGGGAGCTTGCCATTAAG ATCATTCGGCAGTTAATGGAAAAATTTAACTTGGATCTACCAACAGTTACACAGGCCTTC TTAAAAAATAATGGTGAGTTGGAGGCTACTTCCTCCTTCTTAGCGGCTGGTCAGAGAGCT GATAGATACCCCATTTGGTCCCAACAAGGTGACATAGATCTGCAAAAAGATGATGAGGAT ACCAGAGATGCATTGGTCAAAAAACTTAGTGCTCAGAATGTAGCTTGGAGGATTGAGTTT TAA >chr5_random|SGP_v1.0_predicted_protein_3|161_AA MVEAVDLGKDPNGPNHSSILFTREDGNSRSLYLLPSPAKQLLHHSVQEPRPHRWPSLGTP PAALLSAQCVPDRGWELAIKIIRQLMEKFNLDLPTVTQAFLKNNGELEATSSFLAAGQRA DRYPIWSQQGDIDLQKDDEDTRDALVKKLSAQNVAWRIEF*