## date Fri May 9 19:05:05 2003 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr7_random - Length = 1057565 bps # Optimal Gene Structure. 7 genes. Score = 668.246835 # Gene 1 (Reverse). 2 exons. 368 aa. Score = 262.510181 Internal 673845 674928 268.05 - 2 2 5.38 7.65 87.74 140.05 AA 7:368 gene_1 First 686726 686744 -5.54 - 0 1 1.89 3.61 1.12 -1.90 AA 1: 7 gene_1 >chr7_random|SGP_v1.0_predicted_cDNA_1|1103_NN ATGCAGAAGTGGCAGGCAGGTATGGCCTCACATGTGCAAGTTTTCTCCCCTCACACCCTT CAATCAAGTGCCTTCTGTAGTGTGAAGAAACTGAAAATAGAGCCGAGTTCCAACTGGGAC ATGACTGGGTACGGCTCCCACAGCAAAGTGTATAGCCAGAGCAAGAACATCCCCCTGTCG CAGCCAGCCACCACAACCGTCAGCACCTCCTTGCCGGTCCCAAACCCAAGCCTACCTTAC GAGCAGACCATCGTCTTCCCAGGAAGCACCGGGCACATCGTGGTCACCTCAGCAAGCAGC ACTTCTGTCACCGGGCAAGTCCTCGGCGGACCACACAACCTAATGCGTCGAAGCACTGTG AGCCTCCTTGATACCTACCAAAAATGTGGACTCAAGCGTAAGAGCGAGGAGATCGAGAAC ACAAGCAGCGTGCAGATCATCGAGGAGCATCCACCCATGATTCAGAATAATGCAAGCGGG GCCACTGTCGCCACTGCCACCACGTCTACTGCCACCTCCAAAAACAGCGGCTCCAACAGC GAGGGCGACTATCAGCTGGTGCAGCATGAGGTGCTGTGCTCCATGACCAACACCTACGAG GTCTTAGAGTTCTTGGGCCGAGGGACGTTTGGGCAAGTGGTCAAGTGCTGGAAACGGGGC ACCAATGAGATCGTAGCCATCAAGATCCTGAAGAACCACCCATCCTATGCCCGACAAGGT CAGATTGAAGTGAGCATCCTGGCCCGGTTGAGCACGGAGAGTGCCGATGACTATAACTTC GTCCGGGCCTACGAATGCTTCCAGCACAAGAACCACACGTGCTTGGTCTTCGAGATGTTG GAGCAGAACCTCTATGACTTTCTGAAGCAAAACAAGTTTAGCCCCTTGCCCCTCAAATAC ATTCGCCCAGTTCTCCAGCAGGTAGCCACAGCCCTGATGAAACTCAAAAGCCTAGGTCTT ATCCACGCTGACCTCAAACCAGAAAACATCATGCTGGTGGATCCATCTAGACAACCATAC AGAGTCAAGGTCATCGACTTTGGTTCAGCCAGCCACGTGTCCAAGGCTGTGTGCTCCACC TACTTGCAGTCCAGATATTACAG >chr7_random|SGP_v1.0_predicted_protein_1|368_AA MQKWQAGMASHVQVFSPHTLQSSAFCSVKKLKIEPSSNWDMTGYGSHSKVYSQSKNIPLS QPATTTVSTSLPVPNPSLPYEQTIVFPGSTGHIVVTSASSTSVTGQVLGGPHNLMRRSTV SLLDTYQKCGLKRKSEEIENTSSVQIIEEHPPMIQNNASGATVATATTSTATSKNSGSNS EGDYQLVQHEVLCSMTNTYEVLEFLGRGTFGQVVKCWKRGTNEIVAIKILKNHPSYARQG QIEVSILARLSTESADDYNFVRAYECFQHKNHTCLVFEMLEQNLYDFLKQNKFSPLPLKY IRPVLQQVATALMKLKSLGLIHADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCST YLQSRYYag # Gene 2 (Forward). 2 exons. 35 aa. Score = 0.951194 First 854878 854898 -2.00 + 0 0 3.14 3.20 2.19 -2.10 AA 1: 7 gene_2 Terminal 868198 868281 2.95 + 0 0 0.84 0.00 8.55 2.45 AA 8: 35 gene_2 >chr7_random|SGP_v1.0_predicted_cDNA_2|105_NN ATGCAGGCACACATTTACCAGGACTGGAAGGAATATGTGTTCATCTATAAAAGTAACCAG AGGAACGACGCCGCACTGATGGCTATATGGTACATCTTCAGATGA >chr7_random|SGP_v1.0_predicted_protein_2|35_AA MQAHIYQDWKEYVFIYKSNQRNDAALMAIWYIFR* # Gene 3 (Reverse). 1 exons. 40 aa. Score = 1.518983 Single 943457 943576 1.52 - 0 0 0.00 -2.78 3.51 13.42 AA 1: 40 gene_3 >chr7_random|SGP_v1.0_predicted_cDNA_3|120_NN ATGACAACTACATCTTGTAAATTATACCCAATACTGCCGGCAGTCTATCCCTCTAAAGAA TATTTGCCCCTTTCATCCCTTCCTAACAATCAGATAATAAAATACAGCACCTATAAATAA >chr7_random|SGP_v1.0_predicted_protein_3|40_AA MTTTSCKLYPILPAVYPSKEYLPLSSLPNNQIIKYSTYK* # Gene 4 (Forward). 9 exons. 224 aa. Score = 116.290569 First 945128 945134 -6.22 + 0 1 1.02 3.20 0.80 -0.70 AA 1: 3 gene_4 Internal 966337 966464 27.26 + 2 0 3.30 3.70 12.64 10.83 AA 3: 45 gene_4 Internal 967215 967281 18.10 + 0 1 4.80 3.99 8.43 4.71 AA 46: 68 gene_4 Internal 968251 968330 0.09 + 2 0 -1.74 1.16 7.10 4.74 AA 68: 94 gene_4 Internal 970921 971037 40.35 + 0 0 6.00 3.15 19.88 10.74 AA 95:133 gene_4 Internal 973789 973845 4.41 + 0 0 4.96 3.87 7.47 -5.70 AA 134:152 gene_4 Internal 974825 974905 21.29 + 0 0 4.42 4.05 10.84 7.11 AA 153:179 gene_4 Internal 975697 975761 -0.10 + 0 2 2.34 1.66 10.10 -6.50 AA 180:201 gene_4 Terminal 976007 976076 11.11 + 1 0 2.96 0.00 8.77 6.11 AA 201:224 gene_4 >chr7_random|SGP_v1.0_predicted_cDNA_4|672_NN ATGGCAGGACGCTGTGCAGAGCTGCAAGTCCGTATCACTGAGGCTGTGGCCACAGCCACT GAGCAGAGAGAGCTGATCGCCCGCCTGGAGCAGGACCTGAGCATCATTCAGTCCATCCAG CGGCCCGATGCCGAGGGTGCCGCTGAGCACCGCCTGGAGAAGATCCCAGAGCCCATCAAA GAGGCCACTGCCCTATTCTACGAGGGCCAGGTGGATTCACTGCTTTCCATCATCTCCAGC CAGAGGGAGCGCTTCCGTGCCCGGAACCAGGAGCTTGAGGCCGAGAACCGCCTGGCCCAG CACACCCTCCAGGCCCTGCAGAGTGAGCTGGACAGCCTGCGCGCCGACAACATCAAGCTC TTTGAGAAGATCAAGTTCCTGCAGAGCTACCCTGGCCGGGAGCGGCAGAAGAAGTACCTG AGCTTGAGTCCCTGGGACAAGGCCACCCTCAGCATGGGGCGTCTGGTTCTCTCCAACAAG ATGGCGCGCACCATCGGCTTCTTCTACACACTGTTCCTGCACTGCCTGGTCTTCCTGGTG CTCTACAAGCTGGCATGGAGCGAGAGCATGGAGAGGGACTGTGCCACCTTCTGCGCCAAG AAGTTCGCTGACCACCTGCACAAGTTCCACGAGAATGACAACGGGGCTGCGGCTGGTGAC TTGTGGCAGTGA >chr7_random|SGP_v1.0_predicted_protein_4|224_AA MAGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIK EATALFYEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKL FEKIKFLQSYPGRERQKKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLV LYKLAWSESMERDCATFCAKKFADHLHKFHENDNGAAAGDLWQ* # Gene 5 (Forward). 12 exons. 555 aa. Score = 248.590155 First 978716 978763 -6.22 + 0 0 3.33 2.26 1.90 -4.80 AA 1: 16 gene_5 Internal 993595 993762 35.26 + 0 0 -3.01 -0.35 24.39 18.42 AA 17: 72 gene_5 Internal 993903 994247 36.02 + 0 0 -3.43 2.89 41.86 -7.03 AA 73:187 gene_5 Internal 999685 999786 30.91 + 0 0 4.63 4.53 13.29 10.32 AA 188:221 gene_5 Internal 1001779 1001870 26.48 + 0 2 4.36 3.78 11.31 10.14 AA 222:252 gene_5 Internal 1007298 1007389 16.75 + 1 1 4.41 3.16 5.66 9.04 AA 252:283 gene_5 Internal 1007498 1007644 7.48 + 2 1 2.14 -0.43 6.20 9.89 AA 283:332 gene_5 Internal 1010153 1010367 54.39 + 2 0 2.58 -1.96 19.49 38.23 AA 332:403 gene_5 Internal 1013297 1013468 32.39 + 0 1 2.12 5.38 11.43 18.86 AA 404:461 gene_5 Internal 1030298 1030356 1.24 + 2 0 0.57 0.56 5.23 4.85 AA 461:480 gene_5 Internal 1030552 1030664 11.07 + 0 2 2.66 0.86 5.34 10.92 AA 481:518 gene_5 Terminal 1031933 1032044 2.83 + 1 0 3.27 0.00 4.63 4.03 AA 518:555 gene_5 >chr7_random|SGP_v1.0_predicted_cDNA_5|1665_NN ATGGAGGCAGCTCCGGCTGGCAAGGAGACCAGGACAGAACTGCCAGAGTTTTGCGAGCTG CATGCGCAGGCGGCCGCCGTGGACTTTGCGCACAAGTTCTGCCGTTTCCTGCGGGACAAC CCAGCTTACGACACGCCCGACGCCGGCGCCTCCTTCTCCCGCCACTTCGCCGCCAACTTC CTGGACGTCTTCGGCGAGGAGGTGCGCCGCGTGCTGGCCCGCGTTCGCAAGGGCTTCTCG CTGCGCAACATGAGCCTGTGCGTGGTGGACGGCGTGCGCGACATGTGGCACCGGCGCGCC TCGCCCGAGCCCGACGCGGCAGCTGCCCCGCGCACCGCCGAGCCCCGCGACAAGTGGACG CGGCGCCTGAGGCTGTCGCGGACGCTGGCTGCCAAGGTGGAGCTGGTGGACATTCAACGC GAGGGGGCGCTGCGCTTCATGGTGGCCGACGACGCGGCCGCGGGCTCCGGGGGCTCGGCT CAGTGGCAGAAGTGCCGCCTGCTCCTGCGCAGGGCTGTGGCCGAGGAACGCTTCCGCCTG GAGTTCTTCGTGCCGCCCAAAGCCTCCAGGCCCAAGGTCAGCATCCCACTGTCAGCCATC ATTGAGGTCCGCACCACCATGCCCCTGGAAATGCCAGAGAAGGATAACACATTCGTCCTC AAGGTAGAGAATGGAGCCGAATACATCTTGGAGACCATCGACTCTCTGCAGAAGCACTCG TGGGTAGCTGACATCCAGGGCTGCGTGGACCCCGGTGACAGTGAGGAAGACACCGAGCTC TCCTGTACCCGAGGAGGCTGTCTGGCCAGCCGCGTGGCCTCCTGCAGCTGTGAGCTCCTG ACTGATGAGACGACAGCCGTGGGTGCAGTGGTGACAGCCCCCCACAGCCGAGGTCGAGAT GCCGTCAGAGAATCCCTGATCCACGTCCCGCTAGAGACCTTTCTGCAGACCCTGGAATCC CCGGGCGGCAGCGGCAGTGACAGCAATAACACAGGGGAACAGGGTGCAGAGACGGATCCC GAGGCTGAACCCGAGCTGGAGCTATCCGACTACCCATGGTTCCACGGGACACTGTCCCGG GTCAAGGCTGCTCAACTGGTTCTGGCAGGGGGGCCCCGGAACCACGGCCTCTTCGTGATC CGCCAAAGTGAGACTCGGCCTGGGGAGTACGTGCTGACCTTCAACTTCCAGGGCAAGGCC AAGGCAAGTCACCTGCGCCTGTCCCTGAACGGCCACGGCCAGTGTCACGTACAGCATCTG TGGTTCCAGTCTGTGCTTGACATGCTCCGCCACTTCCACACACACCCCATCCCACTGGAG TCAGGGGGCTCGGCCGACATCACCCTTCGCAGCTATGTGCGGGCCCAGGACCCCCCACCA GATCTAAAGCTTAGGGACTATGGAGTGGATCTCATTGAAGTTTCAGACAATGGATGTGGG TCTCTTTCAGCTCTGAAACATCACACATGTAAGATTCAAGAGTTTGCCGACCTAACTGAG GTTGAAACTTTCGGCTTTCAGGGGGAAGCTCTGAGCTCACTGTGTGCACTGAGCGATGTC ACCATTTCTACCTGCCACGCATCGGCGAAGGTTGGACTCGACTGGTGTTTGATCACTATG GGAAAATCATCCAGAAAACCCCCTACCCCCACCCCAGAGGGATGA >chr7_random|SGP_v1.0_predicted_protein_5|555_AA MEAAPAGKETRTELPEFCELHAQAAAVDFAHKFCRFLRDNPAYDTPDAGASFSRHFAANF LDVFGEEVRRVLARVRKGFSLRNMSLCVVDGVRDMWHRRASPEPDAAAAPRTAEPRDKWT RRLRLSRTLAAKVELVDIQREGALRFMVADDAAAGSGGSAQWQKCRLLLRRAVAEERFRL EFFVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHS WVADIQGCVDPGDSEEDTELSCTRGGCLASRVASCSCELLTDETTAVGAVVTAPHSRGRD AVRESLIHVPLETFLQTLESPGGSGSDSNNTGEQGAETDPEAEPELELSDYPWFHGTLSR VKAAQLVLAGGPRNHGLFVIRQSETRPGEYVLTFNFQGKAKASHLRLSLNGHGQCHVQHL WFQSVLDMLRHFHTHPIPLESGGSADITLRSYVRAQDPPPDLKLRDYGVDLIEVSDNGCG SLSALKHHTCKIQEFADLTEVETFGFQGEALSSLCALSDVTISTCHASAKVGLDWCLITM GKSSRKPPTPTPEG* # Gene 6 (Reverse). 5 exons. 274 aa. Score = 30.092468 Terminal 1040113 1040217 -7.22 - 0 0 0.00 5.37 6.82 -10.20 AA 240:274 gene_6 Internal 1041280 1041673 14.25 - 1 0 4.55 1.87 27.84 -19.62 AA 108:239 gene_6 Internal 1043720 1043805 -2.86 - 0 2 -0.27 3.55 2.11 3.27 AA 80:108 gene_6 Internal 1045041 1045099 11.17 - 2 0 5.48 3.27 4.56 3.67 AA 60: 79 gene_6 First 1046133 1046310 14.74 - 0 1 -2.08 2.33 15.30 6.41 AA 1: 60 gene_6 >chr7_random|SGP_v1.0_predicted_cDNA_6|822_NN ATGGAGTGGTGGGACCAATCTGAGGAGTCGTTGGAGGAGGAGCCACGGAAGGTGCTCGCC CCTGAGCCTGAGGAGATCTGGGTGGCGGAGATGCTGTGTGGCCTCAAGATGAAGCTGAAG CGACGGCGAGTGTCGCTCGTGCTCCCTGAGCACCACGAGGCCTTCAACAGGCTGCTTGAG GATCCTGTCATTAAAAGATTCCTGGCCTGGGACAAAGATCTGAGGGTGTCGGACAAGTAT CTCCTGGCTATGGTCATAGCGTATTTCAGCCGGGCCGGCTTCCCCTCCTGGCAATACCAA CGCATTCATTTCTTCCTGGCTCTCTACCTGGCCAATGACATGGAGGAGGACGACGAGGAC TCCAAACAAAACATCTTCCACTTCCTGTATAGGAAGAACCGCTCTCGCATACCCTTGCTC CGTAAGCGTTGGTTCCAGTTAGGCCATTCCATGAACCCGAGGGCCAGGAAGAACCGCTCT CGCATACCCTTGCTCCGTAAGCGTCGGTTCCAGTTATACCGTTCCACGAACCCGAGGGCC AGGAAGAACCGCTCTCGCATACCCTTGCTCTGTAAGCGTCGGTTCCAGTTATACCGTTCC ATGAACTCGAGGGCCAGGAAGAACCGCTCTCAGATAGTCCTGTTCCAGAAACGACGGTTC CACTTCTTCTGTTCCATGAGCTGCAGGGCTTGGGTTTCCCCAGAGGAGTTGGAGGAGAAC ACCGGACCCAGGGGAGATGTGGATTTTCAGCAGGAACTTTATTCCAATGCTAATGGCAGA CACCAGGCAGGAGGAGAGGAACCATTTGTGCAGATCATCTAG >chr7_random|SGP_v1.0_predicted_protein_6|274_AA MEWWDQSEESLEEEPRKVLAPEPEEIWVAEMLCGLKMKLKRRRVSLVLPEHHEAFNRLLE DPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLANDMEEDDED SKQNIFHFLYRKNRSRIPLLRKRWFQLGHSMNPRARKNRSRIPLLRKRRFQLYRSTNPRA RKNRSRIPLLCKRRFQLYRSMNSRARKNRSQIVLFQKRRFHFFCSMSCRAWVSPEELEEN TGPRGDVDFQQELYSNANGRHQAGGEEPFVQII* # Gene 7 (Reverse). 1 exons. 94 aa. Score = 8.293286 Terminal 1047617 1047900 8.29 - 2 0 0.00 1.24 12.83 2.84 AA 1: 94 gene_7 >chr7_random|SGP_v1.0_predicted_cDNA_7|284_NN CCCCTGGGGTAGATCCCAGCCCCCCATGTAGGTCCCTTGGCTGGAAAAGGAAGAGGGAGT GGTCAGATGAATCTGAGGAGGAGCCGGAGAAGGAGCTCGCCCCTGAGCCTGAGGAGACCT GGGTAGTGGAGATGCTGTGTGGGCTCAAGATGAAGCTGAAGCAACAGCGAGTGTCATCCA TCCTCCCTGAGCACCACAAGGACTTCAACAGTCAGCTTGGTAGGAGGATACCCCAGAGAG CACCTCCAATCCTGTTCTTTCTAAAAAGAGGAAACTTCCAATAA >chr7_random|SGP_v1.0_predicted_protein_7|94_AA ccPGVDPSPPCRSLGWKRKREWSDESEEEPEKELAPEPEETWVVEMLCGLKMKLKQQRVS SILPEHHKDFNSQLGRRIPQRAPPILFFLKRGNFQ*