## date Wed May 7 23:22:42 2003 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr3_random - Length = 637829 bps # Optimal Gene Structure. 7 genes. Score = 858.498972 # Gene 1 (Forward). 12 exons. 511 aa. Score = 177.271081 First 48513 48563 7.43 + 0 0 6.08 -2.99 7.61 2.82 AA 1: 17 gene_1 Internal 65624 66073 47.06 + 0 0 3.71 0.93 24.24 21.31 AA 18:167 gene_1 Internal 66927 67058 1.99 + 0 0 -0.21 0.10 4.97 7.83 AA 168:211 gene_1 Internal 67280 67408 22.90 + 0 0 3.52 3.72 8.77 12.41 AA 212:254 gene_1 Internal 88673 88695 -10.82 + 0 2 1.45 2.30 0.22 -2.30 AA 255:262 gene_1 Internal 91340 91482 28.46 + 1 1 4.99 0.90 17.27 10.36 AA 262:310 gene_1 Internal 92429 92484 1.93 + 2 0 2.03 0.01 4.55 5.11 AA 310:328 gene_1 Internal 96904 97118 34.04 + 0 2 5.62 0.56 16.32 16.80 AA 329:400 gene_1 Internal 103340 103391 -6.33 + 1 0 1.27 0.43 0.98 1.75 AA 400:417 gene_1 Internal 107170 107271 8.41 + 0 0 3.01 2.47 6.71 3.41 AA 418:451 gene_1 Internal 111426 111506 15.12 + 0 0 4.06 2.78 6.52 8.33 AA 452:478 gene_1 Terminal 114755 114853 27.08 + 0 0 6.92 0.00 14.54 8.66 AA 479:511 gene_1 >chr3_random|SGP_v1.0_predicted_cDNA_1|1533_NN ATGCCGCGGGTGTACATCGGCCGCCTGAGCTACCAGGCCCGGGAGCGCGATAGTATAAAT GGCATTCGCACAGAGGAGGTGGCTGTCGTGACAAAGGGGCCATCTACTAACCCTGACTCT GAATGGGAGGGTCCCAAGCATTCGGTAGTTCCTAGTAAAAGCCAGATGACCACCTCGTCG GAGTCTCTGCAAAGCTTTGCCTTTGGCTCCCTCTCCATAAGCAGCAAGGAGACAGAAGAG AAGGAGGAGGGGGCAGCTGGCTATCTTGATATTAAGGAGATGCCAAGAGGCCCAACTGGG GGATGTATAGGAGTGGAGGAACAGGCCAGTGCCTTAAAGTTCTCAGTAACACCAGCTTCC TGTCAGCTGCAACCTGGTGTAAAAAAGGCAGAGAGTAGTGAAGAACATGTTACACCAGGA GAGCCACCTGGAAAACAAAATGGATCATTTCTTGACTTTCATGTGGGTAACCAGTTCCCC ACCCTCATTCGAAGTTTCCAGACACAAGGACAAATCAAAGTGATTGCTATTTGGCAAATC GTTTTATATTCAAATTCTGAAGGTCAGTCTGAAGTGTTTTATATCACCAATCATAACTGT CTGCTCTTACAGCTTTCCATTAAGCTTATGAAACCTCCCCTGGTGAAGACACAAACTGTC ACCATCTCAGATAATGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGACGTCCCTATT GTCCACACTGAGACCAAGACCATCACTTATGAGGCTGCCCAGATTGTCACTGCTTTCTCT GAAAGATATGGTTTTGTGGAGTTTGATGATCTGCGTGATGCAGATGATGCTGTTTATGAA CTGAATGGCAAAGACCTTTGTGGTGAGCGAGTAATTGTTGAGCATGCCCGCGGCCCACGG CGAGATGGCAGTTACGGTTCTGGACGCAAGTACAGACTTATTGTGGAGAATTTGTCAAGT CGGTGCAGCTGGCAAGACCTAAAGGATTATATGCGTCAGGCAGGAGAAGTGACTTATGCA GATGCTCACAAGGGACGCAAAAATGAAGGGGTGATTGAATTTGTATCTTATTCTGATATG AAAAGAGCTTTGGAAAAGTTGGATGGAACTGAAGTCAATGGGAGAAAAATCAGATTAGTT GAAGACAAGCCAGGTTCCAGACGACGCCGGTCCTACTCCAGAAGCCGGAGTCATTCAAGG AGCGGGAACATGCCAAGTCTGAATCCAGCCAGAGGGAAGGTCGAGGAGAGAACTGACGAC AACAGTGGAGACTTGGACCCAGGAGTCTTGCTGACAGCTCAAACTATCACATCTGAGACC CCAAGCAGCACCACCACAACTCAAATTACCAAGACTGTAAAAGGTGGGATTTCAGAGACA CGTATTGAAAAGAGAATTGTGATCACAGGAGATGCTGATATTGACCATGATCAGGTCCTT GTACAAGCCATCAAGGAGGCAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTC GTCCACCAGGAGACTGAGATTGCTGATGAGTGA >chr3_random|SGP_v1.0_predicted_protein_1|511_AA MPRVYIGRLSYQARERDSINGIRTEEVAVVTKGPSTNPDSEWEGPKHSVVPSKSQMTTSS ESLQSFAFGSLSISSKETEEKEEGAAGYLDIKEMPRGPTGGCIGVEEQASALKFSVTPAS CQLQPGVKKAESSEEHVTPGEPPGKQNGSFLDFHVGNQFPTLIRSFQTQGQIKVIAIWQI VLYSNSEGQSEVFYITNHNCLLLQLSIKLMKPPLVKTQTVTISDNANAVKSEIPTKDVPI VHTETKTITYEAAQIVTAFSERYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPR RDGSYGSGRKYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDM KRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSGNMPSLNPARGKVEERTDD NSGDLDPGVLLTAQTITSETPSSTTTTQITKTVKGGISETRIEKRIVITGDADIDHDQVL VQAIKEAKEQHPDMSVTKVVVHQETEIADE* # Gene 2 (Reverse). 5 exons. 169 aa. Score = 7.416016 Terminal 281731 281880 1.53 - 0 0 0.00 1.20 1.73 9.83 AA 120:169 gene_2 Internal 293874 294007 5.53 - 2 0 -1.30 4.64 3.20 8.58 AA 75:119 gene_2 Internal 303235 303263 -7.12 - 1 1 4.87 -0.58 2.75 -2.90 AA 65: 75 gene_2 Internal 314785 314856 1.58 - 1 2 1.87 2.48 4.32 1.57 AA 41: 65 gene_2 First 344044 344165 5.89 - 0 2 1.92 -1.03 4.93 8.79 AA 1: 41 gene_2 >chr3_random|SGP_v1.0_predicted_cDNA_2|507_NN ATGCTTCGCAGGGAGAGCATGCAACCATCTATTTATAAGCTAACACCGGCATTATCTTCC TCTTTTAGGACGCAGAGATCCATTACTGCGCGCGGCGGGGAAGAGGACGCCGCCGGGAGC TGGGAAGAAGGAGGACAGAAGTGGATGCCAAGTTCTTGCACAAGGTCAAACGTTTCTGGA GGAAAGGAGCCAAGGGAAGTTTCTGTTAGAATTGATGGAGGAGTAAGAAGCCCTTTCCCC TCAGAGGCCACTGTAATTAACCCAAGAGAGAATAAGCCATGCTTCCAGCCCAAGAAGCAG CTGCCATCAGGGTTTGACATATTTAAACTGAAAATCTGTTTTCGGGGCTCACCCAATATC TGGGGACAGATCTGCCTTGTCAGCTTCTCAGGAGAAGAGTCAGACATTAATTTCTCTCTT CTAGAAAGGAAACCCATTCGAGGGATTATGAATGTTACTCTGTGTCTGGGTCTGAAGTTT AAATCTTTACAAGCATGCAGTTATTAA >chr3_random|SGP_v1.0_predicted_protein_2|169_AA MLRRESMQPSIYKLTPALSSSFRTQRSITARGGEEDAAGSWEEGGQKWMPSSCTRSNVSG GKEPREVSVRIDGGVRSPFPSEATVINPRENKPCFQPKKQLPSGFDIFKLKICFRGSPNI WGQICLVSFSGEESDINFSLLERKPIRGIMNVTLCLGLKFKSLQACSY* # Gene 3 (Reverse). 2 exons. 313 aa. Score = 98.149287 Terminal 374687 374904 -4.00 - 2 0 0.00 -0.23 0.76 9.80 AA 241:313 gene_3 First 400499 401219 102.15 - 0 1 4.95 1.58 31.58 60.48 AA 1:241 gene_3 >chr3_random|SGP_v1.0_predicted_cDNA_3|939_NN ATGTCTATGAAATGGACTTCAGCTCTTCTGCTGATACAGCTGAGCTGTTACTTTAGCTCT GGGAGTTGTGGAAAGGTGCTGGTGTGGCCCACAGAATTCAGCCACTGGATGAATATAAAG ACAATCCTGGATGAACTTGTCCAGAGAGGTCATGAGGTGACTGTATTGGCATCTTCAGCT TCCATTTCTTTCGATCCCAACAGCCCATGTACTCTTAAATTTGAAGTTTATCCTGTATCT TTAACTAAAACTGAGTTTGAGCACATGATCAAGCAGCTGGCTAAGAGATGGCACGATCTT CCAGAAGACACGCATTGGTCATATTTTTTCCAAGTACAAGAAATCATGTGGACATTTAAT GACATACTTAGAAAGTTCTGTAAGGATATAGTTTCAAATAAGAAACTTATGAAGAAACTA CAGGAGTCAAGATTTGATGTTGTTCTTGCAGATGCTGTTTTCCCCTTTGGTGAGCTGCTG GCCGAGTTACTTAAAATACCCTTTGTCTACAGCCTCCGCTTCTCTCATGGCTACGCAATT GAAAAGCATAGTGGAGGACTTCTGTTCCCTCCTTCCTATGTGCCTGTTGTTATGTCAGAA CTAAGTGACCAAATGACTTTCATAGAGAGGGTAAAAAATATGATCTATGTGCTTTATTTT GAATTTTGGTTCCAAATATTTGACATGAAGAAGTGGGATCAGTTCTACAGTGAAGTTCTA GTTTTCCTGAGGTCTGTCTGCCGGGGACCTCATCGACTGTGGCAGGATGCCTGTTTTGAT CAATATGTACACAATTCTGGCTATAAATTCCCTCAAAATGCTTGGGTGGGTGCCCATGAT TTATTTATTTCCGTTTGCCAATTAGGTCTAGAGAGCCTTCCTAATAGACTCACTGGAAAA AAAACAGAAAGAAATCTTGGAAGGAAAGAGCTGAACTGA >chr3_random|SGP_v1.0_predicted_protein_3|313_AA MSMKWTSALLLIQLSCYFSSGSCGKVLVWPTEFSHWMNIKTILDELVQRGHEVTVLASSA SISFDPNSPCTLKFEVYPVSLTKTEFEHMIKQLAKRWHDLPEDTHWSYFFQVQEIMWTFN DILRKFCKDIVSNKKLMKKLQESRFDVVLADAVFPFGELLAELLKIPFVYSLRFSHGYAI EKHSGGLLFPPSYVPVVMSELSDQMTFIERVKNMIYVLYFEFWFQIFDMKKWDQFYSEVL VFLRSVCRGPHRLWQDACFDQYVHNSGYKFPQNAWVGAHDLFISVCQLGLESLPNRLTGK KTERNLGRKELN* # Gene 4 (Reverse). 4 exons. 294 aa. Score = 73.378823 Terminal 407625 407947 30.82 - 2 0 0.00 0.06 15.83 23.53 AA 187:294 gene_4 Internal 411275 411475 9.77 - 2 1 4.95 1.09 -0.01 15.14 AA 120:187 gene_4 Internal 428875 429171 37.29 - 2 1 -1.60 1.96 12.91 31.55 AA 21:120 gene_4 First 429199 429259 -4.50 - 0 1 -0.83 -1.64 3.10 6.48 AA 1: 21 gene_4 >chr3_random|SGP_v1.0_predicted_cDNA_4|882_NN ATGCCTAAGAAGTTTGTCCAGATGCTGGTTTTTAATTTGACTCTGACTGAAGTTGTTCTA AATGGTAGCCATTGGTTAAATATTAAGATTATTCTAGAAGAGTTGATTCAAAGAAATCAC AATGTGACTGTACTGGCTTCATCAGCAACTCTATTCATCAACTCCAATCCCGATTCTCCT GTGAATTTTGAAGTGATACCTGTTTCCTACAAGAAGAGCAATATAGATTCCTTAATTGAG CATATGATAATGCTGTGGATTGACCATAGACCAACTCCTCTCACAATATGGGCTTTCTAC AAAGAACTAGGAAAACTTCTAGACACTTTCTTTCAAATTAACATACAACTCTGTGATGGA GACCTCTATCACAAGGAAAATAGATGTGGAGTAGCAAACTGGAATGTCCAGCAGCATTTA TCTGTTATTGAGGCTATAACCTTTAAAAGAAAATTAAGTTTTTTTTATGAAGAGCATAAA ATCTCCCCCTGTTGTAGACCTACCTTAGGTAAAGGTTTGGCAGGTTTGCAGTGCAATCCT CCAACAAACTCAAAATTAGAGAACACTGCCCGTTTCATTGCCTCATATTGTGCATTGCTC GTTTTATTTCTAAGACTTATAATGAGTAATTATTCAAATATTCATCAAATCCTTGATCAT CCAAAAACCAAAGCTTTCATAACTCATGGTGGAGCCAACGGCACCTATGAGAGGATCTAC CATGGGATCCCTATGTGGAGGGGGCTTCCTTTGTTTGCAGATCAACCTGATAACACTGTT CACATGAAGGCTAGGGGAGAAGCTATCAGACTGGACACAAAAACAATGTCAACTACAGAT TTGCTCAATGCATTAAAAGCAGTCATTAAAGATCCTTCATGA >chr3_random|SGP_v1.0_predicted_protein_4|294_AA MPKKFVQMLVFNLTLTEVVLNGSHWLNIKIILEELIQRNHNVTVLASSATLFINSNPDSP VNFEVIPVSYKKSNIDSLIEHMIMLWIDHRPTPLTIWAFYKELGKLLDTFFQINIQLCDG DLYHKENRCGVANWNVQQHLSVIEAITFKRKLSFFYEEHKISPCCRPTLGKGLAGLQCNP PTNSKLENTARFIASYCALLVLFLRLIMSNYSNIHQILDHPKTKAFITHGGANGTYERIY HGIPMWRGLPLFADQPDNTVHMKARGEAIRLDTKTMSTTDLLNALKAVIKDPS* # Gene 5 (Forward). 3 exons. 536 aa. Score = 456.958546 First 492345 492365 -7.64 + 0 0 3.60 0.41 1.02 -2.10 AA 1: 7 gene_5 Internal 493489 493623 36.10 + 0 0 4.36 2.47 17.52 13.76 AA 8: 52 gene_5 Terminal 497915 499366 428.49 + 0 0 6.84 0.00 161.48 208.81 AA 53:536 gene_5 >chr3_random|SGP_v1.0_predicted_cDNA_5|1608_NN ATGGCTGAACTTTTGTCCCAGCTGAGCATCGAGCAGGCCCAGACGGTGGCGGAACAGGTG GAGATGAAGGCGAAGGTTGTGCAGTCGGAGGTCAAAGCCGTGACGGCGAGGCATAAGAAA GCCCTGGAGGAACGCGAGTGTGAGCTGCTGTGGAAGGTAGAAAAGATCCGCCAGGTGAAA GCCAAGTCTCTGTACCTGCAGGTGGAGAAGCTGCGGCAAAACCTCAACAAGCTTGAGAGC ACCATCAGTGCCGTGCAGCAGGTCCTGGAGGAGGGTAGAGCGCTAGACATCCTACTGGCC CGAGACCGGATGCTGGCCCAGGTGCAGGAGCTGAAGACCGTGCGGAGCCTCCTGCAGCCC CAGGAAGACGACCGAGTCATGTTCACACCCCCCGATCAGGCACTGTACCTTGCCATCAAG TCTTTTGGCTTTGTTAGCAGCGGGGCCTTTGCCCCACTCACCAAGGCCACAGGCGATGGC CTCAAGCGTGCCCTCCAGGGTAAGGTGGCCTCCTTCACAGTCATTGGTTATGACCACGAT GGTGAGCCCCGCCTCTCAGGAGGCGACCTGATGTCGGCTGTGGTCCTGGGCCCTGATGGC AACCTGTTTGGTGCAGAGGTGAGTGATCAGCAGAATGGGACATACGTGGTGAGTTACCGA CCCCAGCTGGAGGGTGAGCACCTGGTATCTGTGACACTGTGCAACCAGCACATTGAGAAC AGCCCTTTCAAGGTGGTGGTCAAGTCAGGCCGCAGCTACGTGGGCATTGGGCTCCCGGGC CTGAGCTTCGGCAGTGAGGGTGACAGCGATGGCAAGCTCTGCCGCCCTTGGGGTGTGAGT GTAGACAAGGAGGGCTACATCATTGTCGCCGACCGCAGCAACAACCGCATCCAGGTGTTC AAGCCCTGCGGCGCCTTCCACCACAAATTCGGCACCCTGGGCTCCCGGCCTGGGCAGTTC GACCGACCAGCCGGCGTGGCCTGTGACGCCTCACGCAGGATCGTGGTGGCTGACAAGGAC AATCATCGCATCCAGATCTTCACGTTCGAGGGCCAGTTCCTCCTCAAGTTTGGTGAGAAA GGAACCAAGAATGGGCAGTTCAACTACCCTTGGGATGTGGCGGTGAATTCTGAGGGCAAG ATCCTGGTCTCAGACACGAGGAACCACCGGATCCAGCTGTTTGGGCCTGATGGTGTCTTC CTAAACAAGTATGGCTTCGAGGGGGCTCTCTGGAAGCACTTTGACTCCCCACGGGGTGTG GCCTTCAACCATGAGGGCCACTTGGTGGTCACTGACTTCAACAACCACCGGCTCCTGGTT ATTCACCCCGACTGCCAGTCGGCACGCTTTCTGGGCTCGGAGGGCACAGGCAATGGGCAG TTCCTGCGCCCACAAGGGGTAGCTGTGGACCAGGAAGGGCGCATCATTGTGGCGGATTCC AGGAACCATCGGGTACAGATGTTTGAATCCAACGGCAGCTTCCTGTGCAAGTTTGGTGCT CAAGGCAGCGGCTTTGGGCAGATGGACCGCCCTTCCGGCATCGCCATCACCCCCGACGGA ATGATCGTTGTGGTGGACTTTGGCAACAATCGAATCCTCGTCTTCTAA >chr3_random|SGP_v1.0_predicted_protein_5|536_AA MAELLSQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKKALEERECELLWKVEKIRQVK AKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLARDRMLAQVQELKTVRSLLQP QEDDRVMFTPPDQALYLAIKSFGFVSSGAFAPLTKATGDGLKRALQGKVASFTVIGYDHD GEPRLSGGDLMSAVVLGPDGNLFGAEVSDQQNGTYVVSYRPQLEGEHLVSVTLCNQHIEN SPFKVVVKSGRSYVGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVF KPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEK GTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGV AFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADS RNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF* # Gene 6 (Forward). 5 exons. 151 aa. Score = 38.932036 First 504566 504571 -7.50 + 0 0 -1.88 5.66 0.64 -0.60 AA 1: 2 gene_6 Internal 522329 522496 31.46 + 0 0 6.47 4.49 6.45 18.03 AA 3: 58 gene_6 Internal 561347 561370 -4.86 + 0 0 4.92 2.28 -1.90 0.33 AA 59: 66 gene_6 Internal 563519 563722 20.17 + 0 0 1.10 4.55 14.58 5.12 AA 67:134 gene_6 Terminal 578187 578237 -0.34 + 0 0 0.45 0.00 5.95 2.83 AA 135:151 gene_6 >chr3_random|SGP_v1.0_predicted_cDNA_6|453_NN ATGCAGGTGCTGCACCTGTACTGTGACACTTGCTCTGTACCCATCTGTCGTGAGTGCACA ATGGGCCGGCATGGGGGCCACAGCTTCATCTACCTCCAGGAGGCACTGCAGGACTCACGG GCACTCACCATCCAGCTGCTGGCAGATGCCCAGCAGGGACGACAGGCAATCCAGCCCCCT CCCAGCACTCGGGCGGAAGAGCACCTGTGCGACAACTGCGTCCGAGCGCACCAGCGCGTG CGCCTCACCAAGGACCACTACATCGAGCGCGGCCCGCCGGGTCCCGGTGCCGCAGCAGCG GCGCAGCAGCTCGGGCTCGGGCCGCCCTTTCCCGGCCCGCCCTTCTCCATCCTCTCAGTG TTTCCCGAGCGCCTCGGCTTCTGCCAGCACCACGACGACGAGCGATGCATACGAAATGTA GATATTTCCCTAAACGCCGGCTTTGACATTTAA >chr3_random|SGP_v1.0_predicted_protein_6|151_AA MQVLHLYCDTCSVPICRECTMGRHGGHSFIYLQEALQDSRALTIQLLADAQQGRQAIQPP PSTRAEEHLCDNCVRAHQRVRLTKDHYIERGPPGPGAAAAAQQLGLGPPFPGPPFSILSV FPERLGFCQHHDDERCIRNVDISLNAGFDI* # Gene 7 (Reverse). 1 exons. 55 aa. Score = 6.393183 Terminal 634207 634372 6.39 - 1 0 0.00 -0.88 3.58 15.32 AA 1: 55 gene_7 >chr3_random|SGP_v1.0_predicted_cDNA_7|166_NN TGTTTTTATAGGTAATACTCAGCTGGCCTTACAGATCATCAAAAGGAATCAGCTGCTCCC TGCAGTGAAAACACACTCTGAAGTGAGAAAGAAGCCAGTGTTTCAGCCTGTCCACCCGAT CCAGCCCATCCAAATGCCGGCTTTCACCACTGTGCAGAGAAAGTGA >chr3_random|SGP_v1.0_predicted_protein_7|55_AA tVFIGNTQLALQIIKRNQLLPAVKTHSEVRKKPVFQPVHPIQPIQMPAFTTVQRK*