## date Wed May 7 23:22:37 2003 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr1_random - Length = 584119 bps # Optimal Gene Structure. 11 genes. Score = 613.993425 # Gene 1 (Reverse). 7 exons. 251 aa. Score = 53.138586 Internal 5750 5804 7.71 - 1 0 3.32 6.59 1.09 3.70 AA 233:251 gene_1 Internal 8177 8210 -2.64 - 2 2 1.23 4.93 4.32 -3.40 AA 222:233 gene_1 Internal 9069 9345 28.60 - 0 1 2.78 3.17 12.57 16.86 AA 130:222 gene_1 Internal 11616 11772 7.90 - 1 0 5.20 2.17 -3.85 14.51 AA 77:129 gene_1 Internal 17088 17274 9.42 - 2 2 5.34 3.87 7.76 -0.67 AA 15: 77 gene_1 Internal 48873 48905 -3.25 - 2 1 3.39 3.58 2.91 -3.30 AA 4: 15 gene_1 First 73129 73138 5.40 - 0 1 6.11 5.21 2.01 -1.00 AA 1: 4 gene_1 >chr1_random|SGP_v1.0_predicted_cDNA_1|753_NN ATGTCGAAAGCAAAAGCAACAGTGGGGATCAGCATCAACTTGGAACATTCTAGTATGCCA GTAGAAAAAAATATCACTTTAGAAAGGCCTTCTAATGTAAATCTCACATGCCAGTTCACA ACATCTGGGGATTTGAATGCAGTAAATGTGACTTGGAAAAAAGATGGTGAACAACTTGAG AATAATTATCTTGTCAGTGCAACAGGAAGCACCTTGTATACCCAATACAGTAACATACAT TTCTCTATTTTATTCTCAGTCCCTGAACTTCATGGGAAAAACAAGCCATTGATCTCTTAC GTAGGGGATTCTACTGTCTTGACATGTAAATGTCAAAATTGTTTTCCTTTAAATTGGACC TGGTACAGTAGTAATGGGAGTGTAAAGGTTCCTGTTGGTGTTCAAATGAATAAATATGTG ATCAATGGAACATATGCTAACGAAACAAAGCTGAAGATAACACAACTTTTGGAGGAAGAT GGGGAATCTTACTGGTGCCGTGCACTATTCCAATTAGGCGAGAGTGAAGAACACATTGAG CTTGTGGTGCTGAGCTATTTGGTGCCCCTCAAACCATTTCTTGTAATAGTGGCTGAGGTG ATTCTTTTAGTGGCCACCATTCTGCTTTGTGAAAAGTACACACAAAAGAAAAAGAAGCAC TCAGATGAGGGGAAAGAATTTGAGCAGATTGAACAGCTGAAATCAGATGATAGCAATGGT ATAGAAAATAATGTCCCCAGGCATAGAAAAAAT >chr1_random|SGP_v1.0_predicted_protein_1|251_AA MSKAKATVGISINLEHSSMPVEKNITLERPSNVNLTCQFTTSGDLNAVNVTWKKDGEQLE NNYLVSATGSTLYTQYSNIHFSILFSVPELHGKNKPLISYVGDSTVLTCKCQNCFPLNWT WYSSNGSVKVPVGVQMNKYVINGTYANETKLKITQLLEEDGESYWCRALFQLGESEEHIE LVVLSYLVPLKPFLVIVAEVILLVATILLCEKYTQKKKKHSDEGKEFEQIEQLKSDDSNG IENNVPRHRKN # Gene 2 (Forward). 3 exons. 88 aa. Score = 24.069431 First 241314 241435 18.64 + 0 2 -1.75 6.29 7.82 12.54 AA 1: 41 gene_2 Internal 245733 245797 5.84 + 1 1 4.86 0.47 2.58 6.73 AA 41: 63 gene_2 Terminal 245899 245975 -0.41 + 2 0 -0.29 0.00 -0.44 15.14 AA 63: 88 gene_2 >chr1_random|SGP_v1.0_predicted_cDNA_2|264_NN ATGTTTGATGTAACACCAAGAGTTACGTACAAGAATGTGCCTAACTGGCATAGAGATTTG GTGCCAATGTGTGAAATCATCACCATGATGTTGTGTGGCAACAAAGTGGATATTAAGGAC AGGCTGGCAGAGGACAGTGGAGCAGCCAACACACAAAACTACCATTTGTGCATGGCTAAA GACCGTGGGATGAAGGAGATCTTTTGCGAGAGGCATGTTCTCCTGTGGGTAGGTCGTCAC TGCCAGAAAGGGACATTTAATTAA >chr1_random|SGP_v1.0_predicted_protein_2|88_AA MFDVTPRVTYKNVPNWHRDLVPMCEIITMMLCGNKVDIKDRLAEDSGAANTQNYHLCMAK DRGMKEIFCERHVLLWVGRHCQKGTFN* # Gene 3 (Reverse). 1 exons. 38 aa. Score = 6.376985 Single 246995 247108 6.38 - 0 0 0.00 -2.05 9.97 8.32 AA 1: 38 gene_3 >chr1_random|SGP_v1.0_predicted_cDNA_3|114_NN ATGGAATTTCCAGATTATAAACAATGGAAGATAGAAGAAACACCATTAGAAACTATCCAG GAGAAGCTGGCTGCAGGAGGGCTAAGGGATCTATGGGGCTGTAATGAAGCTTAG >chr1_random|SGP_v1.0_predicted_protein_3|38_AA MEFPDYKQWKIEETPLETIQEKLAAGGLRDLWGCNEA* # Gene 4 (Forward). 5 exons. 448 aa. Score = 237.673941 First 301446 301472 -7.46 + 0 0 -2.17 5.38 2.82 -2.70 AA 1: 9 gene_4 Internal 302495 302661 31.88 + 0 2 4.57 2.45 13.99 14.58 AA 10: 65 gene_4 Internal 304357 304441 21.42 + 1 0 6.84 2.60 7.34 9.55 AA 65: 93 gene_4 Internal 306566 307368 150.83 + 0 2 4.88 3.16 48.53 86.64 AA 94:361 gene_4 Terminal 317079 317340 41.00 + 1 0 4.19 0.00 16.34 26.77 AA 361:448 gene_4 >chr1_random|SGP_v1.0_predicted_cDNA_4|1344_NN ATGTGCTCAGTTGTAGCAGACCTACAGGCTATCAATATGACGGCTGAAGAAACAGTGAAT GTAAAAGAGGTTGAAATCATTAAGCTAATTTTGGACTTCCTGAATTCAAAGAAGCTTCAC ATTAGTATGCTGGCCCTGGAGAAGGAAAGTGGAGTCATAAATGGCCTGTTTTCAGATGAT ATGCTTTTCCTGAGGTTTCGTTATATTATCCTGAAGCAGAAGTTTTTAGAAGCTTTATGT GTTAACAACGCGATGTCAGCAGAAGATGAGCCCCAGCATCTGGAATTTACCATGCAAGAA GCTGTGCAATGTTTACATGCTCTAGAAGAATACTGTCCTTCTAAAGATGACTATAGTAAG CTCTGTTTGCTTTTGACTTTGCCTCGTCTGACCAATCATGCCGAGTTTAAGGACTGGAAT CCCAGCACCGCACGAGTTCACTGTTTTGAAGAGGCTTGTGTCATGGTTGCAGAATTCATC CCTGCTGATAGGAAGCTAAGTGAAGCTGGTTTTAAGGCTAGTAACAATCGTTTATTTCAG CTTGTAATGAAAGGCCTGCTTTATGAATGCTGTGTAGAATTTTGTCAGAGTAAAGCAACT GGAGAAGAAATTACAGAAAGCGAAGTGCTTCTTGGCATCGACCTCTTATGTGGTAATGGT TGTGATGATTTGGATCTGAGTTTACTGTCATGGCTTCAGAATCTTCCATCTTCTGTCTTC TCTTGTGCTTTTGAACAGAAAATGCTTAATATTCATGTTGACAAACTTCTGAAACCTACA AAAGCTGCATATGCTGATCTTTTGACTCCTCTTATCAGCAAACTCTCTCCCTATCCATCA TCCCCAATGAGAAGACCTCAATCAGCTGATGCCTATATGACCCGCTCTCTGAATCCTGCT TTAGATGGCCTCACCTGTGGACTAACCAGTCATGATAAGAGAATTTCAGACCTTGGAAAC AAAACTTCTCCAATGTCACACTCCTTTGCTAACTTCCATTATCCAGGGGTACAAAACCTC AGTAGAAGTCTCATGCTTGAGAATACAGAATGTCACAGTATTTACGAAGAATCCCCTGAG CGGTCCATTCAAAAGCTTGGTGAATTAAATATTGGAATGGATGGCCTTGGTAATGAGGTA TCAGCACTCAACCAGCAATGTAATGGGAGCAAAGGCAATGGATCTAATGGTTCTTCTGTG ACTAGTTTTACTACACCACCCCAAGACTCTAGTCAGAGATTAACACATGATGCTTCAAAT ATTCATACAAGCACTCCTCGTAATCCTGGATCAACAAATCACATACCTTTTCTGGAGGAA TCACCTTGTGGAAGCCAAATGTAA >chr1_random|SGP_v1.0_predicted_protein_4|448_AA MCSVVADLQAINMTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDD MLFLRFRYIILKQKFLEALCVNNAMSAEDEPQHLEFTMQEAVQCLHALEEYCPSKDDYSK LCLLLTLPRLTNHAEFKDWNPSTARVHCFEEACVMVAEFIPADRKLSEAGFKASNNRLFQ LVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSVF SCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPA LDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPE RSIQKLGELNIGMDGLGNEVSALNQQCNGSKGNGSNGSSVTSFTTPPQDSSQRLTHDASN IHTSTPRNPGSTNHIPFLEESPCGSQM* # Gene 5 (Reverse). 1 exons. 185 aa. Score = 116.203002 Single 320080 320634 116.20 - 0 0 0.00 -0.72 43.09 70.74 AA 1:185 gene_5 >chr1_random|SGP_v1.0_predicted_cDNA_5|555_NN ATGGTTCGCTATTCACTTGACCCGGAGAACCCCACGAAATCATGCAAATCAAGAGGTTCC AATCTTCGTGTTCACTTTAAGAACACTCGTGAAACTGCTCAGGCCATCAAGGGTATGCAT ATACGAAAAGCCACGAAGTATCTGAAAGATGTCACTTTACAGAAACAGTGTGTACCATTC CGACGTTACAATGGTGGAGTTGGCAGGTGTGCGCAGGCCAAGCAGTGGGGCTGGACACAA GGTCGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAACACAGAGAGT AATGCTGAACTTAAGGGTTTAGATGTAGATTCTCTGGTCATTGAGCATATCCAAGTGAAC AAAGCACCTAAGATGCGCCGCCGGACCTACAGAGCTCATGGTCGGATTAACCCATACATG AGCTCTCCCTGCCACATTGAGATGATCCTTACGGAAAAGGAACAGATTGTTCCTAAACCA GAAGAGGAGGTTGCCCAGAAGAAAAGGATATCCCAGAAGAAACTGAAGAAACAAAAACTT ATGGCACGGGAGTAA >chr1_random|SGP_v1.0_predicted_protein_5|185_AA MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNTESNAELKGLDVDSLVIEHIQVN KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKRISQKKLKKQKL MARE* # Gene 6 (Reverse). 4 exons. 115 aa. Score = 53.989512 Terminal 323652 323822 34.63 - 0 0 0.00 2.10 17.41 20.08 AA 59:115 gene_6 Internal 325264 325361 20.96 - 2 0 3.91 1.49 10.32 11.14 AA 26: 58 gene_6 Internal 327786 327834 -4.76 - 0 1 1.17 1.80 7.41 -4.90 AA 10: 26 gene_6 First 328690 328716 3.16 - 0 0 3.67 0.75 4.37 1.46 AA 1: 9 gene_6 >chr1_random|SGP_v1.0_predicted_cDNA_6|345_NN ATGGCAGATGAGGAAGAAGACCCCACGTTTGAGGAAGAAAATGAAGAAATTGGAGGAGGT GCAGAAGGTGGACAGGTGCGATGTATGATGTATGGCTTTGGGGATGACCAGAATCCTTAT ACTGAGTCAGTGGATATTCTTGAAGATCTTGTCATAGAGTTTATCACTGAAATGACTCAC AAGGCAATGTCAATTGGAAGACAAGGTCGAGTACAAGTTGAAGATATCGTCTTCTTGATT CGAAAGGACCCAAGGAAGTTTGCCAGGGTTAAAGACTTGCTTACTATGAATGAAGAATTG AAACGAGCTAGAAAAGCATTTGATGAAGCAAATTATGGATCTTGA >chr1_random|SGP_v1.0_predicted_protein_6|115_AA MADEEEDPTFEEENEEIGGGAEGGQVRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTH KAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANYGS* # Gene 7 (Forward). 3 exons. 75 aa. Score = 24.102462 First 341753 341762 1.29 + 0 1 4.80 2.77 2.79 -1.00 AA 1: 4 gene_7 Internal 343770 343901 19.39 + 2 1 4.92 4.53 1.00 16.20 AA 4: 48 gene_7 Terminal 345298 345380 3.42 + 2 0 4.47 0.00 2.68 5.47 AA 48: 75 gene_7 >chr1_random|SGP_v1.0_predicted_cDNA_7|225_NN ATGACGAACGTGTACTCCTTGGATGGGATTCTGGTGTTTGGTTTGCTCTTTGTTTGCACC TGTGCCTACTTCAAGAAAGTACCTCGTCTCAAAACCTGGCTGCTATCAGAGAAGAAGGGT GTTTGGGGTGTGTTTTACAAAGCCGCTGTGATTGGAACCAGGCTGCATGCTGCTGTGGCA ATTGCTTGTGTTGTAATGGCCTTTTACGTCCTGTTTATAAAATGA >chr1_random|SGP_v1.0_predicted_protein_7|75_AA MTNVYSLDGILVFGLLFVCTCAYFKKVPRLKTWLLSEKKGVWGVFYKAAVIGTRLHAAVA IACVVMAFYVLFIK* # Gene 8 (Reverse). 6 exons. 284 aa. Score = 84.812062 Terminal 354308 354481 12.89 - 0 0 0.00 0.01 3.58 20.47 AA 227:284 gene_8 Internal 355207 355523 54.68 - 2 0 1.17 -1.25 20.65 38.51 AA 121:226 gene_8 Internal 357410 357534 14.82 - 1 1 4.32 4.98 3.87 7.92 AA 79:121 gene_8 Internal 357883 357998 1.33 - 0 2 4.95 -2.60 6.84 2.89 AA 41: 79 gene_8 Internal 358802 358918 9.93 - 0 0 0.64 4.17 5.29 7.89 AA 2: 40 gene_8 First 363591 363593 -8.83 - 0 0 3.02 -0.07 0.00 -0.30 AA 1: 1 gene_8 >chr1_random|SGP_v1.0_predicted_cDNA_8|852_NN ATGAAATTGCCATATAAGAACCCAACACACCTTGCTCAGCAGCAGGAACCCTGGAGTCGG CTCAACTCAACCCCCACAATTACTTCCATGAGGCAGGATGCCTACTATTTTGATCCCGAG ATACCAAAGGATGACCTGGACTTCCGCTTAGCAGCCTTGTACAACCACCACACTGGGACA TTCGAGAACAAAAGTGAGATACTGTTAAACCAGAAAACCACGCAGGATACCTATAGAACC AAGATCCAATTCCCTGGAGAATTTTTAACCCCTCCCACTCCACCCATCACTTTCCTGGCT AACATCAGACACTGGATCAACCCTAAAAAGGAGTCCATCCACAGCATCCAAGGATCCATA GAGATCTGCCTGATCATGCCGGAAACGCTCTCCCAGTCTTCCCAGGGGAGAGTCATGACC ATTCCATACCAGCCCATGCCGGCCAAGTCCCCAGTCATCTGCGCGGGCGGCCAAGATCGT TGCAGCAAGGCTGTGGGCTACCCCCGAGGCACCCGTGACCTGGAGGGACCACCTCTAGAT GCCTACTCGATTCAAGGACAACACATCATTTCTCCGCTTGATCTGGCCAAGCTGAACCAG GTGGCAAGACAACAATCTCACTTTGCCATGATGCACGGCGGGACCGGATTCACCCGAATT GACTCCAGTTCTCCAGAGGCGCCAACATTAATGAGATCCGCCGGATGTCCGGGGCCCAGA TCAAAACTGCCAACCCAGTGGAAGGGTCTTGATAGGCAGGGTACCATCAGGGGCTCTGCT GCTAGTGTCAGTCTGGGCCAGTATTTAATCAATGCCAGGCTTTCCTCTGAGAAGGGTACG GAGCGCAGCTAG >chr1_random|SGP_v1.0_predicted_protein_8|284_AA MKLPYKNPTHLAQQQEPWSRLNSTPTITSMRQDAYYFDPEIPKDDLDFRLAALYNHHTGT FENKSEILLNQKTTQDTYRTKIQFPGEFLTPPTPPITFLANIRHWINPKKESIHSIQGSI EICLIMPETLSQSSQGRVMTIPYQPMPAKSPVICAGGQDRCSKAVGYPRGTRDLEGPPLD AYSIQGQHIISPLDLAKLNQVARQQSHFAMMHGGTGFTRIDSSSPEAPTLMRSAGCPGPR SKLPTQWKGLDRQGTIRGSAASVSLGQYLINARLSSEKGTERS* # Gene 9 (Reverse). 1 exons. 48 aa. Score = 5.953255 Single 456835 456978 5.95 - 0 0 0.00 0.65 5.96 8.79 AA 1: 48 gene_9 >chr1_random|SGP_v1.0_predicted_cDNA_9|144_NN ATGTTTACATCTAGTTCTACTGATCCGTTCACATCTGGAGAGATTATTTATAACTCCCTC TATAACTCTCTGTTTGGAGGCACTGGTGGCTCTACTGACAGACTGATGTCTAGGAAATAT TGCTCTATGTCTAATGGTACCTAA >chr1_random|SGP_v1.0_predicted_protein_9|48_AA MFTSSSTDPFTSGEIIYNSLYNSLFGGTGGSTDRLMSRKYCSMSNGT* # Gene 10 (Forward). 2 exons. 66 aa. Score = 5.249405 First 459506 459558 -6.07 + 0 2 2.37 2.04 4.05 -5.30 AA 1: 18 gene_10 Terminal 460382 460526 11.32 + 1 0 -0.62 0.00 9.31 11.50 AA 18: 66 gene_10 >chr1_random|SGP_v1.0_predicted_cDNA_10|198_NN ATGGAGGGGGGACTGCAGACCCGGGTGCGGGAGGCCAGTGCCAGCGAAGAGAGCTGGGCC GCCGCCTGTAAGCCCCAGAAAGCATTAAAGGTGCAGCAGCCCGCGCCAGACTCCGCAGCC GCCTTTGTACACGTGATTTATGACTTCAATCTTGGTTCACCAAGAGTTCACACGGCTTTG GCTGCTGTTGAAGGTTAA >chr1_random|SGP_v1.0_predicted_protein_10|66_AA MEGGLQTRVREASASEESWAAACKPQKALKVQQPAPDSAAAFVHVIYDFNLGSPRVHTAL AAVEG* # Gene 11 (Reverse). 1 exons. 36 aa. Score = 2.424783 Terminal 547459 547566 2.42 - 0 0 0.00 3.23 6.00 3.82 AA 1: 36 gene_11 >chr1_random|SGP_v1.0_predicted_cDNA_11|108_NN GGTAAGGTTGACCTAGAACCCTATGGACGACCCTTTATAGTTAAGCTTGCCAACTACTTG TCAGAAATGATTAGTGAGAAATGTAGGAAAGAAAATTTCCCCTGTTGA >chr1_random|SGP_v1.0_predicted_protein_11|36_AA GKVDLEPYGRPFIVKLANYLSEMISEKCRKENFPC*