## date Tue Jan 7 14:43:34 2003 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr8_random - Length = 526343 bps # Optimal Gene Structure. 6 genes. Score = 101.729778 # Gene 1 (Reverse). 5 exons. 343 aa. Score = 16.264558 Internal 47766 48197 10.76 - 2 1 4.44 -1.86 36.77 0.00 AA 199:343 chr8_random_1 Internal 49184 49420 2.32 - 2 1 3.14 4.22 8.51 0.00 AA 120:199 chr8_random_1 Internal 51358 51450 0.37 - 2 1 3.11 4.15 3.78 0.00 AA 89:120 chr8_random_1 Internal 88660 88694 -0.07 - 1 1 3.68 4.11 1.89 0.00 AA 77: 89 chr8_random_1 First 98158 98387 2.89 - 0 2 0.48 2.31 15.54 0.00 AA 1: 77 chr8_random_1 >chr8_random_1|geneid_v1.1_predicted_cDNA_1|1027_NN ATGGTCCCATTGACAAATGACAGATGTGAAACTGGGGTTCACATCAACAGTGTCACTGCC AGGGAGGAGGGTCATGCTAGCCATGTCACCGGTAGTGTGGCCCGCAGGGACGCCGACCTG CTGGAGCGTCGTGCCAGCATGGGCTGTGGCAACCACGTGGGCCAGCAGGAGGTTCCCGCT GCACAGCTGTGGGGTGAGGATAGACTGGTTGGTGATATCGGCCATTACAGGTCGGTGAGG GACATGTGGTACTCTGCAGATGCAGGGCATTGCATTACCAAACCTGAGATGATCTTCAAG CTAGAACAAGGAGCAGAGCCATGGATAGTAGAAGAAACCCCAAACCTGAGACTTTCAGCT GTCCAGATCATTGATGACCTTATTGAAAGGAGCCATGAAAGTCATGATAGATTTTTCTGG AAAATTGTAATCACCAACAGCAACACATCAACTCAGGAGAGAGTTGAATTAGGAAAAACA TTTAATTTGAACTCAAACCATGTTTTAAATCTGATTATAAATAATGGAAACAGTTCAGAA ATGAAGCCTGGGCAGTTTAATGTCTGCCAGAACGTGCTTTTCCCTATTAAGCCTGAGTAC TCACACGGGGAGAAACCGTATGGATGTAACGAAAGTGGAAAAACTTTTTGTCAGAAATCA TACCTTATTATACATCAGAGAACTCACACTGGGGAAAAGCTCTATGAATGTAATGAATGT GGAAAATCCTTTCATCAGAAGGCAAATATTCAGAAGCATCAAGGTATTCACACGGGGGAG AAACCCTATGAATGTAGCAAATGTGGAAAAACCTTCAGTCAGAAGTCAGTCCTCACTGTA CATCATAGAACTCAGACTGGAGAAAAACCTTTCGAATGTAATCAGTGTGGGAAAACTTTT TGTTACAAGTCAAACCTCAATATGCATCAGGGAATTCACTCAGGAGAGAAACCCTGTGAA TGTGATGAATGTAGGAAAACTTTTTACCATAAGGCAGTTCTCACCATACATCAGAGAACT CACACAG >chr8_random_1|geneid_v1.1_predicted_protein_1|343_AA MVPLTNDRCETGVHINSVTAREEGHASHVTGSVARRDADLLERRASMGCGNHVGQQEVPA AQLWGEDRLVGDIGHYRSVRDMWYSADAGHCITKPEMIFKLEQGAEPWIVEETPNLRLSA VQIIDDLIERSHESHDRFFWKIVITNSNTSTQERVELGKTFNLNSNHVLNLIINNGNSSE MKPGQFNVCQNVLFPIKPEYSHGEKPYGCNESGKTFCQKSYLIIHQRTHTGEKLYECNEC GKSFHQKANIQKHQGIHTGEKPYECSKCGKTFSQKSVLTVHHRTQTGEKPFECNQCGKTF CYKSNLNMHQGIHSGEKPCECDECRKTFYHKAVLTIHQRTHTg # Gene 2 (Forward). 2 exons. 103 aa. Score = 2.486018 First 114191 114373 0.99 + 0 0 2.17 -1.56 14.04 0.00 AA 1: 61 chr8_random_2 Terminal 118353 118478 1.50 + 0 0 4.12 0.00 10.07 0.00 AA 62:103 chr8_random_2 >chr8_random_2|geneid_v1.1_predicted_cDNA_2|309_NN ATGGCCGATATCACCACCCAGTCTATCCTCACCCCACAGCTGTGCAGCGGGAACCTCCTG CTGGCCCACGTGGTTGCCACAGCCCATGCTGGCACGACGCTCCAGCAGGTCGGCGTCCCT GCGGGCCACACTACCGGTGACATGGCTAGCATGACCCTCCTTCCTGGCAGTGACACTGTT GATAAACTCAGACCCAAGGGGCAGCTCCTCACCAGGGATGTGGAAGTCCTCTACATCATC CCGCAGGGCTTCACCACTCTCACATCCATCATCAACAGAATTCCACAACTTTACGTTTCC CTTTCCTAA >chr8_random_2|geneid_v1.1_predicted_protein_2|103_AA MADITTQSILTPQLCSGNLLLAHVVATAHAGTTLQQVGVPAGHTTGDMASMTLLPGSDTV DKLRPKGQLLTRDVEVLYIIPQGFTTLTSIINRIPQLYVSLS* # Gene 3 (Reverse). 6 exons. 213 aa. Score = 2.111449 Terminal 319485 319530 -1.25 - 1 0 0.00 5.06 3.05 0.00 AA 198:213 chr8_random_3 Internal 332051 332071 0.91 - 1 2 4.55 4.62 2.27 0.00 AA 191:198 chr8_random_3 Internal 332262 332332 1.55 - 0 2 2.28 4.68 7.18 0.00 AA 168:191 chr8_random_3 Internal 333665 333786 1.78 - 2 0 2.72 3.77 8.46 0.00 AA 127:167 chr8_random_3 Internal 363680 363809 -1.28 - 0 1 2.94 0.92 4.77 0.00 AA 84:127 chr8_random_3 First 367067 367315 0.41 - 0 0 -0.65 -1.80 18.44 0.00 AA 1: 83 chr8_random_3 >chr8_random_3|geneid_v1.1_predicted_cDNA_3|639_NN ATGATGCCTCCTGATCTATTGATAGGCTTGGAAGATCAACACTGGGATGATGATGAGCAG AATGGTCATGAAGATGCCCAAAATCAGGGCCCAGATGTTCAGGCACTTGGCGGTGGAGGC ATAGGCCTGGGCGCCAGTCAGGTCGCCAACCATCTTCCTGTGCCTAGACTTCACGGAGTA AGCGAATGCTATGAAGCCCAGGCAGCAGGGGTTCATGAAGAGAGTGTTGAACAGGGACCA GACAACATGTCACTAATGATAGCCACTCTGCTGAAAGAGGAAGTAAATATGAGGTTTTGT GAAGACTGGGGGATGACAAATGACAAATTTATGGTTATGGACTTGCTTTTCATTTCTCCT GCAATAAGTAATGAAAAAAAAGAACAAGCTACTGAATCAGTGTCCCTTTATTACTATGGC ATCAAAGATTTGGCTACTGTTTTCTTCTACATGCTAGTGGCGATAATTATTCATGCCGTA ATTCAAGAGTATATGTTGGATGAAGATATTCCTCGTCAGCTTGTCTACATTGGTCTTTAC CTCTTCCACATTGCTGGAGCTTACCTTTTGAACAATGAAAAGTATCAGAAAGGATCCATT GTTGATGAAAATATAATCGGCTTTTGGTCTGAGATGTAG >chr8_random_3|geneid_v1.1_predicted_protein_3|213_AA MMPPDLLIGLEDQHWDDDEQNGHEDAQNQGPDVQALGGGGIGLGASQVANHLPVPRLHGV SECYEAQAAGVHEESVEQGPDNMSLMIATLLKEEVNMRFCEDWGMTNDKFMVMDLLFISP AISNEKKEQATESVSLYYYGIKDLATVFFYMLVAIIIHAVIQEYMLDEDIPRQLVYIGLY LFHIAGAYLLNNEKYQKGSIVDENIIGFWSEM* # Gene 4 (Forward). 1 exons. 199 aa. Score = 12.188430 Single 476785 477381 12.19 + 0 0 2.05 0.00 39.89 0.00 AA 1:199 chr8_random_4 >chr8_random_4|geneid_v1.1_predicted_cDNA_4|597_NN ATGGAGAAGCCTGCAGGCAGAAAAAAGAAGACGCCGACCCCAAGGGAGGAGGCAGACGTG CAGAAGAGCGCGCTCAGAGAGGAGAAGGTGTCCGGGGACAGAAAGCCACCTGAGAGGCCC ACTGTGCCCAGGAAGCCCCGCACAGAGCCCTGCCTGAGTCCTGAAGACGAAGAGCACGTC TTTGATGCCTTCGACGCTTCATTTAAAGATGACTTTGAGGGGGTTCCCGTGTTCATTCCT TTTCAGAGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGCGGATCTTTAAGCACAAGACA GACCACATTCGCCATCAGAGGGTCCACACTGGAGAGAAGCCCTTCAAGTGTGCGCAGTGC GGGAAGGCCTTCCGGCACAGCTCTGACGTCACCAAACACCAGAGGACTCACACGGGAGAG AAGCCCTTCAAATGCGGGGAGTGCGGGAAAGCCTTTAACTGCGGCTCCAATCTCCTGAAA CATCAGAAGACGCACACCGGGGAGAAGCCCTACGAATGCACGCACTGTGGGAAAGCCTTT GCCTACAGCTCCTGTCTCATCCGCCATCAGAAACGCCACCCTCGGAAGAAGCCCTGA >chr8_random_4|geneid_v1.1_predicted_protein_4|199_AA MEKPAGRKKKTPTPREEADVQKSALREEKVSGDRKPPERPTVPRKPRTEPCLSPEDEEHV FDAFDASFKDDFEGVPVFIPFQRKKPYECSECGRIFKHKTDHIRHQRVHTGEKPFKCAQC GKAFRHSSDVTKHQRTHTGEKPFKCGECGKAFNCGSNLLKHQKTHTGEKPYECTHCGKAF AYSSCLIRHQKRHPRKKP* # Gene 5 (Forward). 3 exons. 211 aa. Score = 37.886937 First 486341 486347 0.27 + 0 1 4.54 3.60 0.98 0.00 AA 1: 3 chr8_random_5 Internal 499128 499173 -0.04 + 2 2 3.10 2.83 3.51 0.00 AA 3: 18 chr8_random_5 Terminal 504066 504645 37.65 + 1 0 3.69 0.00 101.09 0.00 AA 18:211 chr8_random_5 >chr8_random_5|geneid_v1.1_predicted_cDNA_5|633_NN ATGGAGGACGTGTACAGCCACCTCACCTCCACTTGGAAGACCAGCCCCAGCAGGTTTGAG GCGTTCGTCAAGAGTTTCAAGTATATCTCGCTGCTCCTGAAGCACCAGCGCATCCACACG GGCGAGAAGCCCTACGCCTGCCACGAGTGCGGCAAGCGCTTCCGCGGCTGGTCGGGCTTC ATCCAGCACCACCGCATCCACACGGGCGAGAAGCCCTACGAGTGCGGCCAGTGCGGCCGC GCCTTCAGCCACAGCTCGCACTTCACGCAGCACCTGCGCATCCACAACGGCGAGAAGCCC TACAAGTGCGGCGAGTGCGGCCAGGCCTTCAGCCAGAGCTCCAACCTGGTGCGCCACCAG CGGCTGCACACGGGTGAGAAGCCCTACGCCTGCAGCCAGTGCGGCAAGGCCTTCATCTGG AGCTCCGTGCTCATCGAGCACCAGCGCATCCACACTGGCGAGAAGCCCTACGAGTGCTCC GACTGCGGCAAAGCCTTCCGCGGCCGCTCGCACTTCTTCCGGCACCTGCGGACCCACACG GGCGAGAAGCCCTTCGCGTGTGGCGCCTGCGGCAAGGCCTTCGGCCAGAGCTCCCAGCTC ATCCAGCACCAGCGGGTGCACTACCGCGAGTAG >chr8_random_5|geneid_v1.1_predicted_protein_5|211_AA MEDVYSHLTSTWKTSPSRFEAFVKSFKYISLLLKHQRIHTGEKPYACHECGKRFRGWSGF IQHHRIHTGEKPYECGQCGRAFSHSSHFTQHLRIHNGEKPYKCGECGQAFSQSSNLVRHQ RLHTGEKPYACSQCGKAFIWSSVLIEHQRIHTGEKPYECSDCGKAFRGRSHFFRHLRTHT GEKPFACGACGKAFGQSSQLIQHQRVHYRE* # Gene 6 (Forward). 2 exons. 261 aa. Score = 30.792386 First 513108 513169 0.85 + 0 2 6.97 2.83 -0.07 0.00 AA 1: 21 chr8_random_6 Internal 523925 524647 29.94 + 1 2 1.20 0.66 84.55 0.00 AA 21:261 chr8_random_6 >chr8_random_6|geneid_v1.1_predicted_cDNA_6|785_NN ATGCAGTTCCCCGCAGCGTGGGTGGAGGAGGAGGGACAGGTGTCCCAGTCCTTGAGTCTC AGCTTCAAGTGCTCCTCGGACGCGGCAAAGCACCGGAGCATCCACTCGGGGGAGAAACCG TACGAGTGCAGCGACTGCGGGAAGGCCTTCATCCACAGCTCGCACGTGGTCCGGCACCAG CGGGCGCACAGCGGGGAGAGGCCCTACGCGTGCGCCGAGTGCGGCAAGGCCTTCGGCCAG AGCTTCAACCTCCTCCGGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACGCGTGCGCC GACTGCGGCAAGGCCTTCGGCCAGAGGTCGGACGCCGCCAAGCACCGCCGCACCCACACC GGGGAGAGGCTGTACGCGTGCGGCGAGTGCGGGAAGCGCTTCCTGCACAGCTCGAACGTG GTCCGGCACCGGCGGACCCACCACGGGGAGAACCCGTACGAGTGCCGGGAGTGCGGCCAG GCCTTCAGCCAGAGCTCCAACCTCCTCCAGCACCAGCGCGTGCACACGGGGGAGCGGCCC TTCGCCTGCCAGGACTGCGGCCGCGCCTTCAGCCGCAGCTCCTTCCTCCGCGAGCACCGC CGCATCCACACCGGGGAGAAGCCCCACCAGTGCGGCCACTGCGGGCGCGCGTTCCGGGCG CTGTCGGGCTTCTTCCGGCACCAGCGGCTCCACACGGGCGAGAAGCCGTTCCGCTGCACC GAGTGCGGCCGCGCCTTCCGCCTGAGCTTCCACCTCATCCAGCACCGGCGGGTGCATGGC GCCGA >chr8_random_6|geneid_v1.1_predicted_protein_6|261_AA MQFPAAWVEEEGQVSQSLSLSFKCSSDAAKHRSIHSGEKPYECSDCGKAFIHSSHVVRHQ RAHSGERPYACAECGKAFGQSFNLLRHQRVHTGEKPYACADCGKAFGQRSDAAKHRRTHT GERLYACGECGKRFLHSSNVVRHRRTHHGENPYECRECGQAFSQSSNLLQHQRVHTGERP FACQDCGRAFSRSSFLREHRRIHTGEKPHQCGHCGRAFRALSGFFRHQRLHTGEKPFRCT ECGRAFRLSFHLIQHRRVHGAa