## date Tue Jan 7 14:26:58 2003 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr1_random - Length = 584119 bps # Optimal Gene Structure. 7 genes. Score = 66.652659 # Gene 1 (Reverse). 9 exons. 408 aa. Score = 13.364005 Internal 5750 5804 0.89 - 1 0 3.32 6.59 1.12 0.00 AA 390:408 chr1_random_1 Internal 8177 8210 -0.07 - 2 2 1.23 4.93 4.34 0.00 AA 379:390 chr1_random_1 Internal 9069 9345 3.09 - 0 1 2.78 3.17 12.55 0.00 AA 287:379 chr1_random_1 Internal 11616 11743 -0.10 - 2 0 5.20 3.65 0.23 0.00 AA 244:286 chr1_random_1 Internal 16768 16856 -1.54 - 1 1 2.93 1.76 2.88 0.00 AA 214:244 chr1_random_1 Internal 17088 17274 3.14 - 2 2 5.34 3.87 7.78 0.00 AA 152:214 chr1_random_1 Internal 34067 34150 1.23 - 2 1 2.52 5.59 4.67 0.00 AA 124:152 chr1_random_1 Internal 46837 47196 4.62 - 2 1 4.37 4.39 10.92 0.00 AA 4:124 chr1_random_1 First 73129 73138 2.09 - 0 1 6.11 5.21 2.00 0.00 AA 1: 4 chr1_random_1 >chr1_random_1|geneid_v1.1_predicted_cDNA_1|1224_NN ATGTCGAAAGCGTCCTACCCGCGGCACTGGCTGCGAGCGCCGGGCCACCTGCGAGTGTGC GCAGGGACTCTGGACACCCGCGGCGGCGAGCTGAGGGAGCAGTCTCCACGAGGACCCAGG CGGACCCTCTGGCGCCATGCGCGCCCTCCCCGGCCTGCTGGAGGCCAGGGCGCGTACGCC CCGGCTGCTCCTCCTCCAGTGCCTTCTCGCTGCCGCGCGCCCAAGCTCGGCGGACGGCAG TGCCCCAGGTGTGATGGGTACAGGGTCCAGGGTAGGGAGGGCGGAGGGCGCGCGAGGCTC GGGTCCCCGCGGGCAGAGGGCATCGCCGGCGCGCCGGGCAAGGGTGGCGGGGAGAGGCGC GGGGATGCTGATTCGCCTTTTACAAGTCCACCTCTCAGAGAAGAAATAATGGCAAATAAC TTTTCCTTGGAGAGTCATAACATATCACTGACTGAACATTCTAGTATGCCAGTAGAAAAA AATATCACTTTAGAAAGGCCTTCTAATGTAAATCTCACATGCCAGTTCACAACATCTGGG GATTTGAATGCAGTAAATGTGACTTGGAAAAAAGATGGTGAACAACTTGAGAATAATTAT CTTGTCAGTGCAACAGGAAGCACCTTGTATACCCAATACAGGTTCACCATCATTAATAGC AAACAAATGGGAAGTTATTCTTGTTTCTTTCGAGAGGAAAAGGAACAAAGGGGAACATTT AATTTCAAAGTCCCTGAACTTCATGGGAAAAACAAGCCATTGATCTCTTACGTAGGGGAT TCTACTGTCTTGACATGTAAATGTCAAAATTGTTTTCCTTTAAATTGGACCTGGTACAGT AGTAATGGGAGTGTAAAGGTTCCTGTTGGTGTTCAAATGAATAAATATGTGATCAATGGA ACATATGCTAACGAAACAAAGCTGAAGATAACACAACTTTTGGAGGAAGATGGGGAATCT TACTGGTGCCGTGCACTATTCCAATTAGGCGAGAGTGAAGAACACATTGAGCTTGTGGTG CTGAGCTATTTGGTGCCCCTCAAACCATTTCTTGTAATAGTGGCTGAGGTGATTCTTTTA GTGGCCACCATTCTGCTTTGTGAAAAGTACACACAAAAGAAAAAGAAGCACTCAGATGAG GGGAAAGAATTTGAGCAGATTGAACAGCTGAAATCAGATGATAGCAATGGTATAGAAAAT AATGTCCCCAGGCATAGAAAAAAT >chr1_random_1|geneid_v1.1_predicted_protein_1|408_AA MSKASYPRHWLRAPGHLRVCAGTLDTRGGELREQSPRGPRRTLWRHARPPRPAGGQGAYA PAAPPPVPSRCRAPKLGGRQCPRCDGYRVQGREGGGRARLGSPRAEGIAGAPGKGGGERR GDADSPFTSPPLREEIMANNFSLESHNISLTEHSSMPVEKNITLERPSNVNLTCQFTTSG DLNAVNVTWKKDGEQLENNYLVSATGSTLYTQYRFTIINSKQMGSYSCFFREEKEQRGTF NFKVPELHGKNKPLISYVGDSTVLTCKCQNCFPLNWTWYSSNGSVKVPVGVQMNKYVING TYANETKLKITQLLEEDGESYWCRALFQLGESEEHIELVVLSYLVPLKPFLVIVAEVILL VATILLCEKYTQKKKKHSDEGKEFEQIEQLKSDDSNGIENNVPRHRKN # Gene 2 (Forward). 6 exons. 504 aa. Score = 28.580636 First 241314 241435 0.32 + 0 2 -1.75 6.29 7.75 0.00 AA 1: 41 chr1_random_2 Internal 271431 271503 -1.44 + 1 0 4.01 0.56 3.30 0.00 AA 41: 65 chr1_random_2 Internal 302495 302661 4.31 + 0 2 4.57 2.45 14.00 0.00 AA 66:121 chr1_random_2 Internal 304357 304441 3.11 + 1 0 6.84 2.60 7.36 0.00 AA 121:149 chr1_random_2 Internal 306566 307368 18.70 + 0 2 4.88 3.16 48.44 0.00 AA 150:417 chr1_random_2 Terminal 317079 317340 3.57 + 1 0 4.19 0.00 16.40 0.00 AA 417:504 chr1_random_2 >chr1_random_2|geneid_v1.1_predicted_cDNA_2|1512_NN ATGTTTGATGTAACACCAAGAGTTACGTACAAGAATGTGCCTAACTGGCATAGAGATTTG GTGCCAATGTGTGAAATCATCACCATGATGTTGTGTGGCAACAAAGTGGATATTAAGGAC AGTTGCTGCAATAGCAGTCAATTGTTCAAAGAGGACAAGGCTTGCTTAGATGAAGGACTG TCCTCAGATTGCAAGGCTATCAATATGACGGCTGAAGAAACAGTGAATGTAAAAGAGGTT GAAATCATTAAGCTAATTTTGGACTTCCTGAATTCAAAGAAGCTTCACATTAGTATGCTG GCCCTGGAGAAGGAAAGTGGAGTCATAAATGGCCTGTTTTCAGATGATATGCTTTTCCTG AGGTTTCGTTATATTATCCTGAAGCAGAAGTTTTTAGAAGCTTTATGTGTTAACAACGCG ATGTCAGCAGAAGATGAGCCCCAGCATCTGGAATTTACCATGCAAGAAGCTGTGCAATGT TTACATGCTCTAGAAGAATACTGTCCTTCTAAAGATGACTATAGTAAGCTCTGTTTGCTT TTGACTTTGCCTCGTCTGACCAATCATGCCGAGTTTAAGGACTGGAATCCCAGCACCGCA CGAGTTCACTGTTTTGAAGAGGCTTGTGTCATGGTTGCAGAATTCATCCCTGCTGATAGG AAGCTAAGTGAAGCTGGTTTTAAGGCTAGTAACAATCGTTTATTTCAGCTTGTAATGAAA GGCCTGCTTTATGAATGCTGTGTAGAATTTTGTCAGAGTAAAGCAACTGGAGAAGAAATT ACAGAAAGCGAAGTGCTTCTTGGCATCGACCTCTTATGTGGTAATGGTTGTGATGATTTG GATCTGAGTTTACTGTCATGGCTTCAGAATCTTCCATCTTCTGTCTTCTCTTGTGCTTTT GAACAGAAAATGCTTAATATTCATGTTGACAAACTTCTGAAACCTACAAAAGCTGCATAT GCTGATCTTTTGACTCCTCTTATCAGCAAACTCTCTCCCTATCCATCATCCCCAATGAGA AGACCTCAATCAGCTGATGCCTATATGACCCGCTCTCTGAATCCTGCTTTAGATGGCCTC ACCTGTGGACTAACCAGTCATGATAAGAGAATTTCAGACCTTGGAAACAAAACTTCTCCA ATGTCACACTCCTTTGCTAACTTCCATTATCCAGGGGTACAAAACCTCAGTAGAAGTCTC ATGCTTGAGAATACAGAATGTCACAGTATTTACGAAGAATCCCCTGAGCGGTCCATTCAA AAGCTTGGTGAATTAAATATTGGAATGGATGGCCTTGGTAATGAGGTATCAGCACTCAAC CAGCAATGTAATGGGAGCAAAGGCAATGGATCTAATGGTTCTTCTGTGACTAGTTTTACT ACACCACCCCAAGACTCTAGTCAGAGATTAACACATGATGCTTCAAATATTCATACAAGC ACTCCTCGTAATCCTGGATCAACAAATCACATACCTTTTCTGGAGGAATCACCTTGTGGA AGCCAAATGTAA >chr1_random_2|geneid_v1.1_predicted_protein_2|504_AA MFDVTPRVTYKNVPNWHRDLVPMCEIITMMLCGNKVDIKDSCCNSSQLFKEDKACLDEGL SSDCKAINMTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFL RFRYIILKQKFLEALCVNNAMSAEDEPQHLEFTMQEAVQCLHALEEYCPSKDDYSKLCLL LTLPRLTNHAEFKDWNPSTARVHCFEEACVMVAEFIPADRKLSEAGFKASNNRLFQLVMK GLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSVFSCAF EQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGL TCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERSIQ KLGELNIGMDGLGNEVSALNQQCNGSKGNGSNGSSVTSFTTPPQDSSQRLTHDASNIHTS TPRNPGSTNHIPFLEESPCGSQM* # Gene 3 (Reverse). 1 exons. 185 aa. Score = 11.268865 Single 320080 320634 11.27 - 0 0 0.00 -0.72 43.01 0.00 AA 1:185 chr1_random_3 >chr1_random_3|geneid_v1.1_predicted_cDNA_3|555_NN ATGGTTCGCTATTCACTTGACCCGGAGAACCCCACGAAATCATGCAAATCAAGAGGTTCC AATCTTCGTGTTCACTTTAAGAACACTCGTGAAACTGCTCAGGCCATCAAGGGTATGCAT ATACGAAAAGCCACGAAGTATCTGAAAGATGTCACTTTACAGAAACAGTGTGTACCATTC CGACGTTACAATGGTGGAGTTGGCAGGTGTGCGCAGGCCAAGCAGTGGGGCTGGACACAA GGTCGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAACACAGAGAGT AATGCTGAACTTAAGGGTTTAGATGTAGATTCTCTGGTCATTGAGCATATCCAAGTGAAC AAAGCACCTAAGATGCGCCGCCGGACCTACAGAGCTCATGGTCGGATTAACCCATACATG AGCTCTCCCTGCCACATTGAGATGATCCTTACGGAAAAGGAACAGATTGTTCCTAAACCA GAAGAGGAGGTTGCCCAGAAGAAAAGGATATCCCAGAAGAAACTGAAGAAACAAAAACTT ATGGCACGGGAGTAA >chr1_random_3|geneid_v1.1_predicted_protein_3|185_AA MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNTESNAELKGLDVDSLVIEHIQVN KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKRISQKKLKKQKL MARE* # Gene 4 (Reverse). 4 exons. 125 aa. Score = 4.159034 Terminal 323652 323822 2.71 - 0 0 0.00 2.10 17.37 0.00 AA 69:125 chr1_random_4 Internal 325264 325361 1.87 - 2 0 3.91 1.49 10.32 0.00 AA 36: 68 chr1_random_4 Internal 327756 327834 0.18 - 0 1 3.32 1.80 6.52 0.00 AA 10: 36 chr1_random_4 First 328690 328716 -0.60 - 0 0 3.67 0.75 4.36 0.00 AA 1: 9 chr1_random_4 >chr1_random_4|geneid_v1.1_predicted_cDNA_4|375_NN ATGGCAGATGAGGAAGAAGACCCCACGTTTGAGGAAGAAAATGAAGAAATTGGAGGAGGT GCAGAAGGTGGACAGGGTAAAAGAAAGAGACTTTTTTCTAAAGAATTGCGATGTATGATG TATGGCTTTGGGGATGACCAGAATCCTTATACTGAGTCAGTGGATATTCTTGAAGATCTT GTCATAGAGTTTATCACTGAAATGACTCACAAGGCAATGTCAATTGGAAGACAAGGTCGA GTACAAGTTGAAGATATCGTCTTCTTGATTCGAAAGGACCCAAGGAAGTTTGCCAGGGTT AAAGACTTGCTTACTATGAATGAAGAATTGAAACGAGCTAGAAAAGCATTTGATGAAGCA AATTATGGATCTTGA >chr1_random_4|geneid_v1.1_predicted_protein_4|125_AA MADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDL VIEFITEMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEA NYGS* # Gene 5 (Forward). 3 exons. 122 aa. Score = 1.948963 First 341753 341762 0.66 + 0 1 4.80 2.77 2.79 0.00 AA 1: 4 chr1_random_5 Internal 343770 343962 0.46 + 2 2 4.92 1.55 5.19 0.00 AA 4: 68 chr1_random_5 Terminal 345298 345460 0.83 + 1 0 4.47 0.00 9.12 0.00 AA 68:122 chr1_random_5 >chr1_random_5|geneid_v1.1_predicted_cDNA_5|366_NN ATGACGAACGTGTACTCCTTGGATGGGATTCTGGTGTTTGGTTTGCTCTTTGTTTGCACC TGTGCCTACTTCAAGAAAGTACCTCGTCTCAAAACCTGGCTGCTATCAGAGAAGAAGGGT GTTTGGGGTGTGTTTTACAAAGGTGAGGCCATGTCTGGACAGGGAGAAGAGACTGCCATC TCTGGACAGTGTGGAGCTACAAACCGCTGTGATTGGAACCAGGCTGCATGCTGCTGTGGC AATTGCTTGTGTTGTAATGGCCTTTTACGTCCTGTTTATAAAATGAATTCCAAAGCACCC AAGTCATCAACTGCCAACCAAGGGGACGGGGATGAAGAACCTGTTGGAGACCTGAACCCA GTGTAG >chr1_random_5|geneid_v1.1_predicted_protein_5|122_AA MTNVYSLDGILVFGLLFVCTCAYFKKVPRLKTWLLSEKKGVWGVFYKGEAMSGQGEETAI SGQCGATNRCDWNQAACCCGNCLCCNGLLRPVYKMNSKAPKSSTANQGDGDEEPVGDLNP V* # Gene 6 (Reverse). 1 exons. 105 aa. Score = 3.936244 Single 355195 355509 3.94 - 0 0 0.00 1.80 19.64 0.00 AA 1:105 chr1_random_6 >chr1_random_6|geneid_v1.1_predicted_cDNA_6|315_NN ATGCCGGAAACGCTCTCCCAGTCTTCCCAGGGGAGAGTCATGACCATTCCATACCAGCCC ATGCCGGCCAAGTCCCCAGTCATCTGCGCGGGCGGCCAAGATCGTTGCAGCAAGGCTGTG GGCTACCCCCGAGGCACCCGTGACCTGGAGGGACCACCTCTAGATGCCTACTCGATTCAA GGACAACACATCATTTCTCCGCTTGATCTGGCCAAGCTGAACCAGGTGGCAAGACAACAA TCTCACTTTGCCATGATGCACGGCGGGACCGGATTCACCCGAATTGACTCCAGTTCTCCA GAGGTGAAAGGCTAA >chr1_random_6|geneid_v1.1_predicted_protein_6|105_AA MPETLSQSSQGRVMTIPYQPMPAKSPVICAGGQDRCSKAVGYPRGTRDLEGPPLDAYSIQ GQHIISPLDLAKLNQVARQQSHFAMMHGGTGFTRIDSSSPEVKG* # Gene 7 (Forward). 1 exons. 4 aa. Score = 3.394911 First 364561 364574 3.39 + 0 2 9.38 4.49 0.19 0.00 AA 1: 4 chr1_random_7 >chr1_random_7|geneid_v1.1_predicted_cDNA_7|14_NN ATGGCGACCCGCAG >chr1_random_7|geneid_v1.1_predicted_protein_7|4_AA MATRg