## date Thu Apr 3 09:45:39 2003 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr16_random - Length = 382765 bps # Optimal Gene Structure. 6 genes. Score = 189.088655 # Gene 1 (Forward). 3 exons. 130 aa. Score = 13.883307 Internal 2411 2584 4.25 + 0 0 3.39 -0.27 22.19 -17.40 AA 1: 58 gene_1 Internal 3168 3224 1.17 + 0 0 3.74 4.20 6.45 -5.70 AA 59: 77 gene_1 Terminal 3717 3875 8.46 + 0 0 6.73 0.00 20.33 -15.60 AA 78:130 gene_1 >chr16_random|SGP_v1.0_predicted_cDNA_1|390_NN GTGGCCGGCATTCACAAGAAGGTGGCCCGGACCATCGGCATTTCTGTGGATCCGAGGAGG CGGAACAAGTCCACGGAGTCCCTGCAGGCCAACGTGCAGCGGCTGAAGGAGTACCGCTCC AAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCCCCAAGAAGGGAGACAGTTCTGCTGAA GAACTGAAACTGGCCACCCAGCTGACCGGACCGGTCATGCCCGTCCGGAACGTCTATAAG AAGGAGAAAGCTCGAGTCATCACTGAGGAAGAGAAGAATTTCAAAGCCTTCGCTAGTCTC CGTATGGCCCGTGCCAACGCCCGGCTCTTCGGCATACGGGCAAAAAGAGCCAAGGAAGCC GCAGAACAGGATGTTGAAAAGAAAAAATAA >chr16_random|SGP_v1.0_predicted_protein_1|130_AA VAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAE ELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEA AEQDVEKKK* # Gene 2 (Reverse). 16 exons. 593 aa. Score = 87.545873 Terminal 38315 38506 6.30 - 0 0 0.00 2.52 25.45 -18.90 AA 530:593 gene_2 Internal 38995 39123 10.06 - 0 0 1.32 5.16 19.44 -12.90 AA 487:529 gene_2 Internal 69718 69891 10.19 - 0 0 2.14 3.86 23.35 -17.40 AA 429:486 gene_2 Internal 71553 71641 4.48 - 2 0 -0.14 2.92 16.54 -8.90 AA 399:428 gene_2 Internal 71710 71761 7.39 - 0 1 3.54 4.84 9.77 -5.20 AA 382:399 gene_2 Internal 75710 75796 1.84 - 0 0 4.25 3.84 8.60 -8.70 AA 353:381 gene_2 Internal 77311 77394 8.59 - 0 0 3.70 3.65 14.12 -8.40 AA 325:352 gene_2 Internal 78065 78139 10.61 - 0 0 5.16 1.44 15.77 -7.50 AA 300:324 gene_2 Internal 78396 78470 2.64 - 0 0 2.77 2.39 11.54 -7.50 AA 275:299 gene_2 Internal 84022 84153 5.99 - 0 0 3.68 1.17 18.50 -13.20 AA 231:274 gene_2 Internal 86378 86513 1.29 - 1 0 4.71 1.12 14.27 -13.60 AA 185:230 gene_2 Internal 86793 86881 4.78 - 0 2 1.71 4.53 12.94 -8.90 AA 156:185 gene_2 Internal 86969 87145 5.46 - 0 0 2.63 0.38 23.42 -17.70 AA 97:155 gene_2 Internal 87416 87485 0.62 - 1 0 5.34 4.16 4.92 -7.00 AA 73: 96 gene_2 Internal 87817 87967 4.28 - 2 2 1.92 5.16 16.16 -15.10 AA 23: 73 gene_2 First 88104 88170 3.03 - 0 1 3.05 1.66 11.01 -6.70 AA 1: 23 gene_2 >chr16_random|SGP_v1.0_predicted_cDNA_2|1779_NN ATGGACGTGGTCCACCGCATGTGCCGGATGTACCCGGAGACCTTCCTGTATGTCACCAGC AGTGCAGGCATTCGGCAGGCCTTCCGGGAAGGGAAGGTGGCCAGCCTGATCGGCGTGGAG GGCGGCCACTCCATTGACAGCAGTTTGGGCGTCCTGCGGGCACTCTATCAGCTGGGCATG CGGTACCTGACCCTCACCCACAGCTGCAACACGCCCTGGGCTGACAACTGGCTGGTGGAC ACGGGAGACAGCGAGCCCCAGAGCCAAGGCTTGTCACCCTTTGGGCAGCGTGTGGTGAAG GAGCTGAACCGTCTGGGGGTCCTCATCGACTTGGCTCACGTGTCTGTGGCCACCATGAAG GCCACCCTGCAGCTGTCCAGAGCCCCGGTCATCTTCAGCCACTCCTCGGCCTACAGCGTG TGCGCAAGCCGGCGCAACGTGCCTGACGACGTCCTGAGGCTGGTGAAACAGACAGACAGC CTGGTGATGGTGAACTTCTACAACAATTACATTTCCTGCACCAACAAGGCCAACCTGTCC CAAGTGGCCGGTAGGGTCCCTGAGGGGCTGGAGGACGTCTCCAAGTATCCAGACCTGATC GCTGAGCTGCTCAGGAGGAACTGGACGGAGGCGGAGGTCAAGGGCGCACTGGCTGACAAC CTGCTGAGGGTCTTCGAGGCTGTGGAACAGGTCCTCACGGTGGACTACTACTTCGAGGAG GTGCAGAGGCTGCGCTTTGAGGTGTACGACACGCATGGGCCCAGCGGCTTCAGCTGTCAG GAGGACGATTTCCTGGGGGGCATGGAGTGCACCCTGGGGCAGATTGTGGCCCAGAAGAAG GTGACCCGCCCGCTGCTGCTCAAGTTTGGCAGGAACGCTGGCAAGTCCACCATCACGGTG ATCGCCGAGGACATCTCGGGGAACAACGGCTACGTGGAGCTCTCCTTCCGGGCCAGGAAG CTGGACGACAAGGACCTCTTCAGCAAGTCCGACCCCTTCCTGGAGCTCTACAGGGTCAAC GACGACCAGGGCTTGCAGCTGGTGTACAGGACGGAGGCCCAGTGGGACTGTGTGAACCCC AAATACAAGCAGAAGAGACGCAGTTATAAGAACTCAGGAGTGGTCGTCCTGGCTGACCTC AAGGTGTCCCATGACTTTGCCATCAATTTCAACCCTGAGGACGATGAGTGTGAAGGCATC CAGGGCGTGGTGGAGGCCTACCAGAACTGCCTGCCCAGGGTCCAGCTCTACGGCCCCACC AACGTGGCGCCCATCATCTCCAAGCAATACTACATCCTGCTGATCCTGACGGACGGCGTG GTGACCGACATGGCCGACACACGGGAGGCCATTGTGCGTGCCTCACGCCAGCCCATGTCC ATCATCATCGTGGGCGTGGGCAACCGATTCACGACATGCAGGTCTGGACGGGAGACGGCG TCCTGCGCTCCCCACGGGGTGACCAAGAATATGGCCCAGGTGACCAAAGCCCTGGACAAG GCCCTGAGCACCATGGACCTGCAGAAGGTCTCCTCAGTGATGGACAGGTTCGAGCAGCAG GTGCAGAACCTGGACGTCCATACATCGGTGATGGAGGACTCCATGAGCTCGGCCACCACC CTGACCACGCCGCAGGAGCAGGTGGACAGCCTCATCATGCAGATCGCCGAGGAGAATGGC CTGGAGGTGCTGGACCAGCTCAGCCAGCTGCCCGAGGGCGCCTCTGCCGTGGGCGAGAGC TCTGTGCGCAGCCAGGAGGACCAGCTGTCACGGAGGTAG >chr16_random|SGP_v1.0_predicted_protein_2|593_AA MDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGM RYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMK ATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLVKQTDSLVMVNFYNNYISCTNKANLS QVAGRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQVLTVDYYFEE VQRLRFEVYDTHGPSGFSCQEDDFLGGMECTLGQIVAQKKVTRPLLLKFGRNAGKSTITV IAEDISGNNGYVELSFRARKLDDKDLFSKSDPFLELYRVNDDQGLQLVYRTEAQWDCVNP KYKQKRRSYKNSGVVVLADLKVSHDFAINFNPEDDECEGIQGVVEAYQNCLPRVQLYGPT NVAPIISKQYYILLILTDGVVTDMADTREAIVRASRQPMSIIIVGVGNRFTTCRSGRETA SCAPHGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATT LTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRR* # Gene 3 (Forward). 10 exons. 337 aa. Score = 32.434060 First 106709 106742 1.57 + 0 1 3.02 3.84 5.17 -3.40 AA 1: 12 gene_3 Internal 107139 107312 15.84 + 2 1 5.87 1.64 25.81 -17.40 AA 12: 70 gene_3 Internal 118780 118890 0.41 + 2 1 3.07 1.06 13.68 -11.10 AA 70:107 gene_3 Internal 124572 124738 4.22 + 2 0 3.21 2.56 18.74 -16.70 AA 107:162 gene_3 Internal 125266 125343 3.81 + 0 0 3.63 2.44 11.61 -7.80 AA 163:188 gene_3 Internal 130689 130761 -5.73 + 0 1 2.29 -0.34 9.21 -7.30 AA 189:213 gene_3 Internal 131990 132061 5.83 + 2 1 3.38 3.02 12.28 -7.20 AA 213:237 gene_3 Internal 132880 132982 6.27 + 2 2 2.38 3.37 15.58 -10.30 AA 237:271 gene_3 Internal 133243 133324 2.26 + 1 0 3.71 3.21 9.83 -8.20 AA 271:298 gene_3 Terminal 140827 140943 -2.05 + 0 0 -1.69 0.00 18.54 -11.40 AA 299:337 gene_3 >chr16_random|SGP_v1.0_predicted_cDNA_3|1011_NN ATGGCCGGCCCAGAGTTCGTGGAGGTCATTGGAGGCCTCGGCGCTGCCCGTGTGCGGAGC CTCTTTAAGGAAGCCCGAGCCCGGGCCCCCTGCATCGTCTACATCGATGAGATCGACGCG GTGGGCAAGAAGCGCTCCACCACCATGTCCGGCTTCTCCAACACGGAGGAGGAGCAGACG CTCAACCAGCTTCTGGTAGAAATGGATGGGGCTGACATCGCCAACATCTGCAATGAGGCT GCGCTGCACGCGGCGCGGGAGGGACACACTTCCGTGCACACTCTCAACTTCGAGTACGCC GTGGAGCGCGTCCTCGCAGGGGCACAGGACGACCTGAGGAAGGTCACCCGCATCGCCTAC TCCATGGTGAAGCAGTTTGGGATGGCACCTGGCATCGGGCCCATCTCCTTCCCTGAGGCG CAGGAGGGCCTCATGGGCATCGGGCGGCGCCCCTTCAGCCAAGGCCTGCAGCAGATGATG GACCATGAAGCAAGACTGCTGGTGGCCAAGGCCTACAGACACACCGAGAAGGTGCTGCAG GACAACCTGGACAAGTTGCAGGCGCTGGGACGATGCCGGAGTGTGAAGGAGTTTGAGAAG CTGAACCGCATTGGAGAGGGTACCTACGGCATTGTGTATCGGGCCCGGGACACCCAGACA GATGAGATTGTCGCACTGAAGAAGGTGCGGATGGACAAGGAGAAGGATGGCATCCCCATC AGCAGCTTGCGGGAGATCACGCTGCTGCTCCGCCTGCGTCATCCGAACATCGTGGAGCTG AAGGAGGTGGTTGTGGGGAACCACCTGGAGAGCATCTTCCTGGTGATGGGTTACTGTGAG CAGGACCTGGCCAGCCTCCTGGAGAATATGCCAACACCCTTCTCGGAGGCTCAGTACAGC CTCCGGAAGCAGCCCTACAACAACCTGAAGCACAAGTTCCCATGGCTGTCGGAGGCCGGG CTGCGCCTGCTGCACTTCCTGTTCATGTACGACCCTAAGAAAAGGTGCTGA >chr16_random|SGP_v1.0_predicted_protein_3|337_AA MAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQT LNQLLVEMDGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGAQDDLRKVTRIAY SMVKQFGMAPGIGPISFPEAQEGLMGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEKVLQ DNLDKLQALGRCRSVKEFEKLNRIGEGTYGIVYRARDTQTDEIVALKKVRMDKEKDGIPI SSLREITLLLRLRHPNIVELKEVVVGNHLESIFLVMGYCEQDLASLLENMPTPFSEAQYS LRKQPYNNLKHKFPWLSEAGLRLLHFLFMYDPKKRC* # Gene 4 (Reverse). 3 exons. 200 aa. Score = 25.532469 Terminal 143202 143305 -11.87 - 2 0 0.00 1.98 6.37 -10.10 AA 166:200 gene_4 Internal 143981 144173 9.17 - 0 1 1.81 3.83 24.39 -19.30 AA 102:166 gene_4 First 146797 147099 28.23 - 0 0 3.60 7.72 39.32 -30.30 AA 1:101 gene_4 >chr16_random|SGP_v1.0_predicted_cDNA_4|600_NN ATGGGCAGCAGCTCGCTGTCCGAGGACTACCGCCAGTGCCTGGAGCGCGAGCTGCGACGG GGCCGCGCGGGCGTGTGCGGGGACCCCTCGCTGCGCGCGGTGCTCTGGCAGATCCTGGTG GAGGACTTCGACCTGCACGGGGCGCTGCAGGACGACGCGCTGGCTCTGCTCACCGACGGG CTGTGGGGCCGCGCCGACCTGGCGCCCGCGCTACGCGGCCTGGCTCGCGCCTTCGAGCTT CTGGAGCTCGCCGCGGTGCACCTGTACCTGCTGCCCTGGAGGAAGGAGTTCACCACCATC AAGACCTTCTCTGGGGGCTACGTGCACGTGCTGAAGGGTGTGCTCTCAGACGACCTCCTC CTGAAGAGCTTCCAGAAGATGGGCTACGTACGCAGAGACAGCCATCGGCTCATGGTGACC GCCCTGCCCCCCGCCTGCCAGCTGGTGCAGGTGGCCCTGGGCTGCTTCGCCCTCCGGCTG GAGTGTGAGATCCTGGGCCACTCGCTGCGTGTGCTGCTTGGCGACGCCCAGCGGCGCTTG TGGCTACAGCGTGCACAGATGGACACTCTGCTCTACAACAGCCCCGGGGCCCGGCCCTAG >chr16_random|SGP_v1.0_predicted_protein_4|200_AA MGSSSLSEDYRQCLERELRRGRAGVCGDPSLRAVLWQILVEDFDLHGALQDDALALLTDG LWGRADLAPALRGLARAFELLELAAVHLYLLPWRKEFTTIKTFSGGYVHVLKGVLSDDLL LKSFQKMGYVRRDSHRLMVTALPPACQLVQVALGCFALRLECEILGHSLRVLLGDAQRRL WLQRAQMDTLLYNSPGARP* # Gene 5 (Reverse). 8 exons. 205 aa. Score = 8.492826 Terminal 240953 241000 -4.38 - 0 0 0.00 5.53 3.82 -4.50 AA 190:205 gene_5 Internal 247271 247396 7.40 - 0 0 3.53 3.77 16.38 -12.60 AA 148:189 gene_5 Internal 248245 248334 1.29 - 0 0 3.50 4.12 8.93 -9.00 AA 118:147 gene_5 Internal 248614 248687 3.20 - 2 0 4.37 1.48 11.12 -7.40 AA 93:117 gene_5 Internal 252667 252745 2.92 - 0 1 3.87 3.63 9.82 -7.90 AA 67: 93 gene_5 Internal 259321 259377 2.29 - 0 0 2.26 4.95 7.70 -5.70 AA 48: 66 gene_5 Internal 268933 268990 -6.53 - 1 0 2.99 3.81 1.80 -5.80 AA 28: 47 gene_5 First 292565 292647 2.31 - 0 2 3.42 6.05 7.12 -8.30 AA 1: 28 gene_5 >chr16_random|SGP_v1.0_predicted_cDNA_5|615_NN ATGACCACGAAAAGGAAGACATGGAAATATGTCGCGTCGCCTCTTCATGAAAGTCAGCTC ATCGCCTGTTCCTTCAGGCGCTGGCACCTGCCAAACCGCATACCCAGCCTGCCGTTGCTC CGGAGCTTCTTCACAGACGGGGACCCCGGCTGTGCCAACCAAGCTCTGATCAGCAAGAAG CTTAATGATTATCGCAAACGCTGGCAAGACCTCAATGTGATCAACAGCCTGCTCAAGTCC TTCTTCCAAAAGCTGCCCGAGCCTCTTTTCACTGATGACAAATACAACGACTTCATTGAG GCCAACTGCATTGAGGACGCGCGGGAGTGGATGAGGACGCTGCGGAAGCTGATCCGGGAT CTCCCAGGACACTACTATGAAACACTCAAATTCCTTGTGGGCCATCTCAAGACCATCGCT GACCACTCTGAGAAAAACAAGATGGAACCCCGGAACCTGGCCCTGGTCTTTGGGCGGACA CTGGTGAGGACGTCTGAGGACAACATGACAGACATGGTGACCCACATGCCTGACCTCTAC AAGATCGTGGAGACACTGATCCAGCACTCAGACTGGTTCTTCAGTGACGAAGAGGACAAG GGAGAGAGAGAGTAA >chr16_random|SGP_v1.0_predicted_protein_5|205_AA MTTKRKTWKYVASPLHESQLIACSFRRWHLPNRIPSLPLLRSFFTDGDPGCANQALISKK LNDYRKRWQDLNVINSLLKSFFQKLPEPLFTDDKYNDFIEANCIEDAREWMRTLRKLIRD LPGHYYETLKFLVGHLKTIADHSEKNKMEPRNLALVFGRTLVRTSEDNMTDMVTHMPDLY KIVETLIQHSDWFFSDEEDKGERE* # Gene 6 (Forward). 2 exons. 93 aa. Score = 21.200120 First 374291 374360 2.35 + 0 1 1.02 3.68 10.74 -7.00 AA 1: 24 gene_6 Internal 380104 380312 18.85 + 2 0 3.06 1.67 33.63 -20.90 AA 24: 93 gene_6 >chr16_random|SGP_v1.0_predicted_cDNA_6|279_NN ATGGTCGTGTCCACCAAAACGCCGGACAGGAAGCTCATCTTTGGCAAAGGGAACTTTGAG CACCTGACAGGAAAGACCACGCTGATCAAGGCACTGACGGGCGATGCCGCCATCCAGCCA CGGGACCAGCTGTTTGCCACGCTGGACGTCACGGCCCACGCGGGCACGCTGCCCTCACGC ATGACCGTCCTGTACGTGGACACCATCGGCTTCCTCTCCCAGCTGCCGCACGGCCTCATC GAGTCCTTCTCCGCCACCCTGGAAGACGTGGCCCACTCG >chr16_random|SGP_v1.0_predicted_protein_6|93_AA MVVSTKTPDRKLIFGKGNFEHLTGKTTLIKALTGDAAIQPRDQLFATLDVTAHAGTLPSR MTVLYVDTIGFLSQLPHGLIESFSATLEDVAHS