## date Thu Apr 3 09:43:44 2003 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr11_random - Length = 1362657 bps # Optimal Gene Structure. 9 genes. Score = 245.123521 # Gene 1 (Forward). 2 exons. 215 aa. Score = 30.770422 Internal 268129 268527 16.34 + 0 0 0.27 -0.61 51.26 -39.90 AA 1:133 gene_1 Terminal 272960 273205 14.43 + 0 0 3.59 0.00 34.14 -24.30 AA 134:215 gene_1 >chr11_random|SGP_v1.0_predicted_cDNA_1|645_NN CCTGGCCACCGCCAGCTGGAGGTGTGGTTCCAGAACTGCTATGCTCGCTACCACCAGGCC TTCGCCGACTGCAACCAGTCGGAGCGGGAGCTGCAGGGGCGCGAGAGCCAGCAGCTGGCC GCAGAGACCCAGGCGCTGGCACAGCCGACACAGCAAGACTCCACGTGCAGGGTGGGCGAG CGACTGCAAGACACGCACAGCTGGAAGTCAGAGCTGCAGCACGAGGTGGAGGTGCTGGCT GCAGAGACCGACCTGCTGCTGGCCCAGAAGCAACGGCTGGAGCGTGCCCTGGATGCCATG GAGGTGCCCTTCTCCATCGCCACTGACAACATGCAGTGCAGCCAGCGCCACCAGCACGCC AACCTTGTGCGTGACTATGTGGAGACGGAGCTGCTGAAGCCCCAGCTCACACCCCCCAAC ACCCCCAAGCTGGTGAGTGAGGTGGAGGAGCTGTACAAGTCCATCACAGCGCTGCAGGAG AAGCTTCTACAAGCAGAGCAGTCCCTGTGCAACCTCGAGGACATCCACATGAGCCTGGAG AAGGACATCACTGCCATGACCAACAGTCTCTTCATCGACCGCCAGAAGTGCATGGCCCAT CGTACTTGCTACCCCACCATCCTGCAGCTGGCTGGCTACCAGTGA >chr11_random|SGP_v1.0_predicted_protein_1|215_AA PGHRQLEVWFQNCYARYHQAFADCNQSERELQGRESQQLAAETQALAQPTQQDSTCRVGE RLQDTHSWKSELQHEVEVLAAETDLLLAQKQRLERALDAMEVPFSIATDNMQCSQRHQHA NLVRDYVETELLKPQLTPPNTPKLVSEVEELYKSITALQEKLLQAEQSLCNLEDIHMSLE KDITAMTNSLFIDRQKCMAHRTCYPTILQLAGYQ* # Gene 2 (Forward). 7 exons. 248 aa. Score = 29.799292 First 735912 736105 5.02 + 0 2 5.49 -1.40 22.41 -19.40 AA 1: 65 gene_2 Internal 736215 736312 -0.51 + 1 1 2.14 2.18 11.85 -9.80 AA 65: 98 gene_2 Internal 756659 756753 11.39 + 2 0 5.81 0.16 18.49 -9.50 AA 98:129 gene_2 Internal 759446 759468 -7.52 + 0 2 3.43 2.87 -0.92 -2.30 AA 130:137 gene_2 Internal 771396 771519 14.67 + 1 0 1.55 1.89 25.79 -12.40 AA 137:178 gene_2 Internal 773258 773438 17.93 + 0 1 5.45 4.49 25.15 -18.10 AA 179:239 gene_2 Terminal 780113 780141 -11.18 + 2 0 4.17 0.00 -1.02 -2.60 AA 239:248 gene_2 >chr11_random|SGP_v1.0_predicted_cDNA_2|744_NN ATGAGCGGGTGGCCCGTCCTGTGTCACAGAGGGGGCAAGAATGAGCCCGAACCAGAGCAG CCCATTCCTCGCAAGGTGCAGATCCGCTCGCTGCCCAGCCTGGAGGACATCGACCCCGAC GTGCTGGACAGCATGCACTCACTGGGCTGCTTCCGAGACCGCAACAAGCTGCTGCAGGAC CTGCTGTCCGAGGAGGAGAACCAGGAGAAGATGATTTACTTCCTCCTCCTGGACCGGAAA GAAAGGTACCCGAGCCAGGAGGATGAGGACCTGCCCCCCCGGAACGAGATAGGTCTGGTG AAGCTGGGGGTTCACTGCGTCACCTGCCAGAAGGTGGCCATCAAGATCGTCAACCGTGAG AAGCTCAGCGAGTCGGTGCTGATGAAGGCGGCTTTTGGGAGGACATCAAGGCTGGCGAAG AAGTCCTGGTTTGGGAACTTCATCAGCCTGGAGAAGGAGGAGCAGATCTTCGTGGTCATC AAAGACAAACCTCTGAGCTCCATCAAGGCTGACATCGTGCACGCCTTCCTGTCGATTCCC AGTCTCAGCCACAGCGTCATCTCCCAAACGAGCTTCCGGGCCGAGTACAAGGCCACGGGG GGGCCAGCCGTGTTCCAGAAGCCGGTCAAGTTCCAGGTTGATATCACCTACACGGAGGGT GGGGAGGCGCAGAAGGAGAACGGCATCTACTCCGTCACCTTCACCCTGCTCTCAGTGGTG TGGTGCCCAGGCCCTCTGCCCTAA >chr11_random|SGP_v1.0_predicted_protein_2|248_AA MSGWPVLCHRGGKNEPEPEQPIPRKVQIRSLPSLEDIDPDVLDSMHSLGCFRDRNKLLQD LLSEEENQEKMIYFLLLDRKERYPSQEDEDLPPRNEIGLVKLGVHCVTCQKVAIKIVNRE KLSESVLMKAAFGRTSRLAKKSWFGNFISLEKEEQIFVVIKDKPLSSIKADIVHAFLSIP SLSHSVISQTSFRAEYKATGGPAVFQKPVKFQVDITYTEGGEAQKENGIYSVTFTLLSVV WCPGPLP* # Gene 3 (Reverse). 3 exons. 170 aa. Score = 12.959076 Terminal 785432 785748 6.67 - 2 0 0.00 1.59 35.87 -31.40 AA 65:170 gene_3 Internal 796073 796233 12.53 - 1 1 -1.57 4.98 26.97 -16.10 AA 11: 65 gene_3 First 801787 801818 -6.24 - 0 2 2.65 0.81 3.08 -3.20 AA 1: 11 gene_3 >chr11_random|SGP_v1.0_predicted_cDNA_3|510_NN ATGGTGCTTCAGGCTGTCAGCAAAGTGCTCAGGAAGTCCAAAGCCAAGCCTAATGGCAAG AAGCCCGCTGCGGAGGAGAGGAAGGCCTACCTGGAGCCTGAGCACACCAAGGCCAGGATC ACCGACTTCCAGTTCAAGGAGCTGGTGGTGCTGCCCCGCGAGATTGACCTTAACGAGTGG CTGGCCAGCAACAGCAGAGAATTCCCCAGCTCCTTTGAGTCCCTGGTGAGGAAGATCTGC AGACACCTGTTCCACGTGCTGGCACACATCTACTGGGCCCACTTCAAGGAGACGCTGGCC CTGGAGCTGCACGGACACTTGAACACGCTCTACGTCCACTTCATCCTCTTTGCTCGGGAG TTCAACCTGCTGGACCCCAAAGAGACCGCCATCATGGACGACCTCACCGAGGTGCTATGC AGCGGGGCCGGCGGGGTCCACAGTGGGGGCAGTGGGGATGGGGCCGGCAGCGGGGGCCCG GGAGCACAGAACCACGTGAAGGAGAGATGA >chr11_random|SGP_v1.0_predicted_protein_3|170_AA MVLQAVSKVLRKSKAKPNGKKPAAEERKAYLEPEHTKARITDFQFKELVVLPREIDLNEW LASNSREFPSSFESLVRKICRHLFHVLAHIYWAHFKETLALELHGHLNTLYVHFILFARE FNLLDPKETAIMDDLTEVLCSGAGGVHSGGSGDGAGSGGPGAQNHVKER* # Gene 4 (Reverse). 2 exons. 17 aa. Score = 1.495615 Terminal 952159 952167 -5.72 - 0 0 0.00 5.91 0.31 -0.60 AA 15: 17 gene_4 First 985151 985192 7.22 - 0 0 2.35 5.01 9.32 -4.20 AA 1: 14 gene_4 >chr11_random|SGP_v1.0_predicted_cDNA_4|51_NN ATGAGCGTCCCGGCCTTCATCGACATCAGTGAAGAAGATCAGAACATGTAA >chr11_random|SGP_v1.0_predicted_protein_4|17_AA MSVPAFIDISEEDQNM* # Gene 5 (Forward). 5 exons. 196 aa. Score = 28.929730 First 1143224 1143305 3.17 + 0 1 -1.85 3.23 15.89 -8.20 AA 1: 28 gene_5 Internal 1143846 1143901 -6.92 + 2 0 1.26 2.99 4.19 -5.60 AA 28: 46 gene_5 Internal 1164334 1164590 20.18 + 0 2 4.74 3.00 34.76 -25.70 AA 47:132 gene_5 Internal 1169595 1169684 4.99 + 1 2 3.05 1.41 15.14 -9.00 AA 132:162 gene_5 Terminal 1181228 1181330 7.52 + 1 0 4.10 0.00 18.10 -10.00 AA 162:196 gene_5 >chr11_random|SGP_v1.0_predicted_cDNA_5|588_NN ATGGAGGACTGGAGCAAGCTGGAGGCCATCTACTTTGTCATAGTGACGCTTACCACCGTG GGCTTTGGCGACTATGTGGCCGTGCTCACCACCATCGGGAACTGGCTGCGAGTAGTGTCC CGCCGCACTCGGGCAGAGGCCGAGAAGTCTGTGCTGGAGATTCAGGGCCAGGAGCTGCAC CGGAAGCTGGAGGTGCTGGAGGAGGAGGTGCGGGCGGCACGGCAGTCCCAGGAGGAGACC CGCGGGCAGCAGCAGGCCCTGCTTCGGGACCACAAGGCCCTGGCACAGCTGCAGCGGCGG CAGGAGGCCGAGCTAGAGGGACTGCTGGTGCGGCACCGAGACCTCAAGGCCAACATGCGG GCACTGGAGCTGGCCCACCGGGAGCTGCAGGGCCGGGAGAAGAAGGAGCTGCAGAAGATC CTGGACAGAAAGCGCCATAACAGCATCTCGGAGGCCAAGATGAGGGACAAGCATAAGAAG GAGGCGGACCAGCTTAATGCCCTGCGCCGCGAGAAGCAGAAGCTCGTGGAGAAGATCATG GACCAATACCGCGTGCTGGAGCCTGTGCCCCTGCCCCGGACCAAGTGA >chr11_random|SGP_v1.0_predicted_protein_5|196_AA MEDWSKLEAIYFVIVTLTTVGFGDYVAVLTTIGNWLRVVSRRTRAEAEKSVLEIQGQELH RKLEVLEEEVRAARQSQEETRGQQQALLRDHKALAQLQRRQEAELEGLLVRHRDLKANMR ALELAHRELQGREKKELQKILDRKRHNSISEAKMRDKHKKEADQLNALRREKQKLVEKIM DQYRVLEPVPLPRTK* # Gene 6 (Reverse). 1 exons. 139 aa. Score = 0.664060 Single 1211860 1212276 0.66 - 0 0 0.00 0.55 40.67 -41.40 AA 1:139 gene_6 >chr11_random|SGP_v1.0_predicted_cDNA_6|417_NN ATGAAGGTCACCTGTATGGATGCAGCATCACTGGCGGCCTTCAGGAGGTTTATCCGTGGT TTACCACCAATGCCAGGTAAGAACATTGGCTATACAGCAAATGGGCCCGAAGATCGTCTA AACGAACGGGTCTATACTGTCTGGGTCTCTGACCCGAAGGTTCGAACAAACCCGGAAAGG TTTATTCGCCTTCTCGGGTTCCAGAACTCCGAACTTCCGATTGAGAAGTTCCACGTCCGT GGGTACGTCGGCGAAGTGACGGAAGAAGGCACACACCTACGTGTAGGTGTGGAGATGTCT GCGATTGAAGATCTACGCAAGATGGACTTCAGCCCTCACTACATGGCAGGCCTCCTCACT TTTGTGGGAAACCGGTCCGTGGAAGCCACTACCCACTCAGAGTCTCTTAAACACTAG >chr11_random|SGP_v1.0_predicted_protein_6|139_AA MKVTCMDAASLAAFRRFIRGLPPMPGKNIGYTANGPEDRLNERVYTVWVSDPKVRTNPER FIRLLGFQNSELPIEKFHVRGYVGEVTEEGTHLRVGVEMSAIEDLRKMDFSPHYMAGLLT FVGNRSVEATTHSESLKH* # Gene 7 (Reverse). 3 exons. 208 aa. Score = 30.319386 Terminal 1224877 1224980 0.32 - 2 0 0.00 2.73 14.44 -10.10 AA 174:208 gene_7 Internal 1228368 1228698 19.10 - 0 1 1.62 4.97 40.65 -33.10 AA 64:174 gene_7 First 1236462 1236650 10.90 - 0 0 3.03 9.30 17.23 -18.90 AA 1: 63 gene_7 >chr11_random|SGP_v1.0_predicted_cDNA_7|624_NN ATGCGCAGCACCACGCTCCTGGCCCTGCTGGCGCTGGTCTTGCTTTACTTGGTGTCTGGT GCCCTGGTGTTCCGGGCCCTGGAGCAGCCCCACGAGCAGCAGGCCCAGAGGGAGCTGGGG GAGGTCCGAGAGAAGTTCCTGAGGGCCCATCCGTGTGTGAGCGACCAGGAGCTGGGCCTC CTCATCAAGGTGTCGCTCAAGTCTTCCGACCGCCAAGGCTCGGACGAGGAGAGCGTGCAT AGCGACACTCGGGACCTGTGGACCACGACCACGCTGTCCCAGGCACAGCTGAACATGCCG CTGTCCGAGGTCTGCGAGGGCTTCGACGAGGAGGGCCGCAACATTAGCAAGACCCGCGGG TGGCACAGCCCGGGGCGGGGCTCGTTGGACGAGGGGTACAAGGCCAGCCACAAGCCGGAG GAACTGGACGAGCACGCGCTGGTGGAGCTGGAGTTGCACCGCGGCAGCTCCATGGAAATC AATCTGGGGGAGAAGGACACTGCATCCCAGATCGAGGCCGGCTACCAGTTAGGGATCGGC AGGGACCACTTCCTGACTAAGGAGCTGCAGCGATACATCGAAGGGCTCAAGAAGCGCCGG AGCAAGAGGCTGTACGTGAATTAA >chr11_random|SGP_v1.0_predicted_protein_7|208_AA MRSTTLLALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGL LIKVSLKSSDRQGSDEESVHSDTRDLWTTTTLSQAQLNMPLSEVCEGFDEEGRNISKTRG WHSPGRGSLDEGYKASHKPEELDEHALVELELHRGSSMEINLGEKDTASQIEAGYQLGIG RDHFLTKELQRYIEGLKKRRSKRLYVN* # Gene 8 (Reverse). 3 exons. 102 aa. Score = 21.643225 Terminal 1247996 1248049 -5.93 - 0 0 0.00 6.27 2.32 -5.10 AA 85:102 gene_8 Internal 1248724 1248852 11.92 - 0 0 4.37 3.44 19.33 -12.90 AA 42: 84 gene_8 First 1248978 1249100 15.65 - 0 0 2.83 6.72 18.96 -12.30 AA 1: 41 gene_8 >chr11_random|SGP_v1.0_predicted_cDNA_8|306_NN ATGGGTGGCGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTACAACCTGACAGCACTG GCCTTGGCCCCCCAGAGCCGGCTGGACACCTTCGATTACGACTGGTACAATGTGTCTGAC CAGGCGGACCTGGTGAATGACCTGGGGAACAAAGGCTACCTGGTATTTGGCCTCATCCTC TTCGTGTGGGAGCTACTGCCCACCACCCTGCTGGTGGGCTTCTTCCGGGTGCACCGGCCC CCACAGGACCTGGTGCCAGGACCAGGCGGCCACCACCACAGTCTCTACTCCACCCCACAG ACGTGA >chr11_random|SGP_v1.0_predicted_protein_8|102_AA MGGAMVLLYASRACYNLTALALAPQSRLDTFDYDWYNVSDQADLVNDLGNKGYLVFGLIL FVWELLPTTLLVGFFRVHRPPQDLVPGPGGHHHSLYSTPQT* # Gene 9 (Forward). 11 exons. 596 aa. Score = 88.542715 First 1249935 1250034 -10.81 + 0 1 0.87 0.42 7.10 -10.00 AA 1: 34 gene_9 Internal 1256623 1256694 6.83 + 2 1 3.62 3.92 11.75 -7.20 AA 34: 58 gene_9 Internal 1257408 1257626 24.14 + 2 1 3.99 1.59 37.28 -21.90 AA 58:131 gene_9 Internal 1257722 1257837 11.58 + 2 0 0.99 3.50 21.80 -11.60 AA 131:169 gene_9 Internal 1258379 1258486 11.09 + 0 0 2.56 4.55 17.96 -10.80 AA 170:205 gene_9 Internal 1258714 1258794 2.79 + 0 0 0.67 4.45 12.14 -8.10 AA 206:232 gene_9 Internal 1259812 1259985 15.01 + 0 0 2.28 2.04 28.72 -17.40 AA 233:290 gene_9 Internal 1260065 1260259 18.75 + 0 0 4.07 2.22 30.80 -19.50 AA 291:355 gene_9 Internal 1274233 1274569 -2.61 + 0 1 3.67 2.75 25.45 -33.70 AA 356:468 gene_9 Internal 1284758 1284874 11.40 + 2 1 3.11 2.75 20.23 -11.70 AA 468:507 gene_9 Internal 1285860 1286129 0.38 + 2 1 3.23 5.34 20.36 -27.00 AA 507:596 gene_9 >chr11_random|SGP_v1.0_predicted_cDNA_9|1789_NN ATGGTGGATGACACTGGGGCCCTCTCCCTACACTACCACAAGCATTCCTATTCCTGTGCC TTGCAGATCTGCAAGGCCTCTGCTGAGCCATCTGCGCCAGCCAACCTGACCGGGCACGAG GAGAAGGTGAGCGTGGAGAACTTCGAGCTGCTCAAGGTGCTGGGCACGGGAGCCTACGGC AAGGTGTTCCTGGTGCGGAAGGCGGGCGGGCACGACGCGGGGAAGCTGTACGCCATGAAG GTGCTGCGCAAGGCGGCGCTGGTGCAGCGCGCCAAGACGCAAGAGCACACGCGCACCGAG CGCTCGGTGCTGGAGCTGGTGCGCCAGGCGCCCTTCCTGGTCACGCTGCACTACGCTTTC CAGACGGATGCCAAGCTGCACCTCATCCTGGACTATGTGAGCGGCGGGGAGATGTTCACC CACCTCTACCAGCGCCAGTACTTCAAGGAGGCTGAGGTGCGCGTGTATGGGGGTGAGATC GTGCTGGCCCTGGAACACCTGCACAAGCTCGGCATCATTTACCGAGACCTGAAACTGGAG AATGTGCTGCTGGACTCCGAGGGCCACATTGTCCTCACGGACTTCGGGCTGAGCAAGGAG TTCCTGACGGAGGAGAAAGAGCGGACCTTCTCCTTCTGTGGCACCATCGAGTACATGGCC CCCGAAATCATCCGTAGCAAGACGGGGCATGGCAAGCTGCACACGTACCTGGTCCTGGAG CTGCTGCGGGGCGGGGAGCTGCTGGAGCACATCCGCAAGAAGCGGCACTTCAGCGAGTCG GAAGCAAGCCAGATCCTGCGCAGCCTCGTGTCGGCCGTGAGCTTCATGCACGAGGAGGCG GGCGTGGTGCACCGCGACCTCAAGCCGGAGAACATCCTGTACGCCGACGACACGCCCGGG GCCCCGGTGAAAATCATCGACTTCGGGTTCGCGCGGTTGCGGCCGCAGAGTCCCGGGGTG CCCATGCAGACGCCCTGCTTCACGCTGCAGTACGCTGCCCCCGAGCTGCTGGCGCAGCAG GGCTACGACGAGTCCTGCGACCTCTGGAGCCTGGGCGTCATTCTGGTGACCAGCGCCATG TCCAGCCAGGTGGTGGGCATTGAGCCTCTCTACATCAAGGCAGAGCCGGCCAGCCCTGAC AGTCCAAAGGGTTCCTCGGAGACAGAGACCGAGCCTCCTGTGGCCCTGGCCCCTGGTCCA GCTCCCACTCGCTGCCTCCCAGGCCACAAGGAAGAGGAGGATGGGGAGGGGGCTGGGCCT GGCGAGCAGGGCGGTGGGAAGCTGGTGCTCAGCTCCCTGCCCAAGCGCCTCTGCCTGGTC TGTGGGGACGTGGCCTCCGGCTACCACTATGGTGTGGCATCCTGTGAGGCCTGCAAAGCC TTCTTCAAGAGGACCATCCAGGGGAGCATCGAGTACAGCTGTCCGGCCTCCAACGAGTGT GAGATCACCAAGCGGAGACGCAAGGCCTGCCAGGCCTGCCGCTTCACCAAGTGCCTGCGG GTGGGCATGCTCAAGGAGGGCTTCTCATCGCTGTCGCTGTCTGACCAGATGTCAGTACTG CAGAGCGTGTGGATGGAGGTGCTGGTGCTGGGTGTGGCCCAGCGCTCACTGCCACTGCAG GATGAGCTGGCCTTCGCTGAGGACTTAGTCCTGGATGAAGAGGGGGCACGGGCAGCTGGC CTGGGGGAACTGGGGGCTGCCCTGCTGCAACTAGTGCGGCGGCTGCAGGCCCTGCGGCTG GAGCGAGAGGAGTATGTTCTACTAAAGGCCTTGGCCCTTGCCAATTCAG >chr11_random|SGP_v1.0_predicted_protein_9|596_AA MVDDTGALSLHYHKHSYSCALQICKASAEPSAPANLTGHEEKVSVENFELLKVLGTGAYG KVFLVRKAGGHDAGKLYAMKVLRKAALVQRAKTQEHTRTERSVLELVRQAPFLVTLHYAF QTDAKLHLILDYVSGGEMFTHLYQRQYFKEAEVRVYGGEIVLALEHLHKLGIIYRDLKLE NVLLDSEGHIVLTDFGLSKEFLTEEKERTFSFCGTIEYMAPEIIRSKTGHGKLHTYLVLE LLRGGELLEHIRKKRHFSESEASQILRSLVSAVSFMHEEAGVVHRDLKPENILYADDTPG APVKIIDFGFARLRPQSPGVPMQTPCFTLQYAAPELLAQQGYDESCDLWSLGVILVTSAM SSQVVGIEPLYIKAEPASPDSPKGSSETETEPPVALAPGPAPTRCLPGHKEEEDGEGAGP GEQGGGKLVLSSLPKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNEC EITKRRRKACQACRFTKCLRVGMLKEGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQ DELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALANSag