## date Wed Jan 15 10:50:40 2003 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr4_random - Length = 398820 bps # Optimal Gene Structure. 9 genes. Score = 552.963225 # Gene 1 (Reverse). 1 exons. 121 aa. Score = 53.215303 First 918 1279 53.22 - 0 2 0.80 2.76 34.48 13.06 AA 1:121 gene_1 chr4_random|SGP_v1.0_predicted_cDNA_1|362_NN ATGTCCCTAATGGTCTCGGCTGGCCGGGCTGGGGCCGTGTGGTCCCCAACCCACGTGCAG GTGACGGTGCTGCAGGCGCGGGCCTGGCGCCAAGGGCCCGGGGGCACGAGCGACGCGTAC GCGGTGATCCAGGTGGGCAAGGAGAAGTACGCCACTCCGTGTCGGAGCGCAGCCGTGGGC CGCGTGTGGCGCGAGGAGGCCACCTTCGAGCTGCCATCGCTGCTGTCCTCCGGACCCGCG GCCGCCGCCACCCTGCAGCTCACCGTGCTGCACCGCGCGCTGCTCGGCCTCGACAAGTTC CTGGGCCGCGCCGAGGTGGACCTGCGGGATCTGCACCGCGACCAGGGCCGCAGGAAGACG CA chr4_random|SGP_v1.0_predicted_protein_1|121_AA MSLMVSAGRAGAVWSPTHVQVTVLQARAWRQGPGGTSDAYAVIQVGKEKYATPCRSAAVG RVWREEATFELPSLLSSGPAAAATLQLTVLHRALLGLDKFLGRAEVDLRDLHRDQGRRKT ca # Gene 2 (Reverse). 8 exons. 398 aa. Score = 116.012319 Terminal 53588 53905 29.68 - 0 0 0.00 3.93 2.74 33.98 AA 293:398 gene_2 Internal 82561 82603 -6.66 - 1 0 -1.80 6.98 3.13 -4.30 AA 278:292 gene_2 Internal 120377 120524 15.45 - 2 2 -3.11 0.91 17.20 9.21 AA 229:278 gene_2 Internal 121111 121253 25.34 - 1 1 1.21 4.32 10.24 14.93 AA 181:229 gene_2 Internal 121741 121906 4.37 - 2 2 4.19 0.44 4.62 5.03 AA 126:181 gene_2 Internal 122756 122906 24.44 - 0 1 2.04 6.59 11.57 9.51 AA 76:126 gene_2 Internal 124736 124917 27.75 - 2 0 2.69 4.37 7.38 18.93 AA 15: 75 gene_2 First 130924 130966 -4.37 - 0 1 0.00 3.28 5.80 -4.30 AA 1: 15 gene_2 chr4_random|SGP_v1.0_predicted_cDNA_2|1194_NN ATGGCTGCAGAAAGCTCCAACCCTGGTGCAGAAGCGGAACCAGTCTGCATGACAAATGAA GGCCATCCCTGGGTTTCTCTCGTGGTGCAGAAGACTCGACTACAGATTTCACAGGATCCC TCCCTGAATTATGAGTACTTGCCCACCATGGGCCTGAAATCATTCATCCAGGCCTCTCTA GCACTCCTCTTTGGAAAGCACAGCCAAGCCATTGTGGAGAACAGGAGCAAGCAGATATTC CCATTTTTTGATATTCCCTGTCAAGGTTTATACACCAGTGACTTGGAAGAAGATACTAGA ATCTTACAATACTTTGTGTCTCAAGGCTTTGAGTTCTTCTGCAGCCAGTCTCTGTCCAAG AATTTTGGCATTTATGATGAAGGAGTGGGGATGCTAGTGGTGGTGGCAGTCAACAACCAG CAGCTGCTGTGTGTCCTCTCCCAGCTGGAAGGATTAGCCCAGGCCCTGTGGCTAAACCCC CCCAACACGGGTGCACGTGTCATCACCTCCATCCTCTGCAACCCTGCTCTGCTGGGAGAA TGGAAGCAGAGTCTAAAAGAAGTTGTAGAGAACATCATGCTAACCAAGGAAAAAGTGAAG GAGAAACTCCAGCTCCTGGGAACCCCTGGGTCCTGGGGTCACATCACCGAGCAGAGTGGG ACCCACGGCTATCTTGGACTCAACTCCCAGCAGGTGGAATACCTGGTCAGGAAGAAGCAC ATCTATATCCCCAAGAACGGTCAGATTAACTTCAGCTGTATCAATGCCAACAACATAAAT TACATCACTGAGGGCATCAATGAGGCTGTCCTCCTCACAGAGAGCTCAGAGATGTCAGCA TACCTGCTCAATCAATACCTGTTGCAGGAATTAACTTTTGTCGAGGGCTTTGATGATGAG AGCAGAGGCAGAAGGTACCCCCTCAATCTGGGCCTGTCTGTTCTGGTCAGTTTCACTGTA ATCCTCATACGCTTCCAGTCACTGATTGCCTTGGCAATGTCATCATCAACTTTTAGAGAC AGACCTAGGGGGCTGATCTTGGGAGCCAGTGCAGATGTGGCACTGACTTCACCCCCAGTA CACCCCAGGTGTATGAATTTGATCTCACTGGGGTTGAACTTAGGCAGCTGGTGTCAGATG AACCTGGATTTGGGACAGCAGAAGAAAGTTGCCCCACATCCTCCTCCAAGCTGA chr4_random|SGP_v1.0_predicted_protein_2|398_AA MAAESSNPGAEAEPVCMTNEGHPWVSLVVQKTRLQISQDPSLNYEYLPTMGLKSFIQASL ALLFGKHSQAIVENRSKQIFPFFDIPCQGLYTSDLEEDTRILQYFVSQGFEFFCSQSLSK NFGIYDEGVGMLVVVAVNNQQLLCVLSQLEGLAQALWLNPPNTGARVITSILCNPALLGE WKQSLKEVVENIMLTKEKVKEKLQLLGTPGSWGHITEQSGTHGYLGLNSQQVEYLVRKKH IYIPKNGQINFSCINANNINYITEGINEAVLLTESSEMSAYLLNQYLLQELTFVEGFDDE SRGRRYPLNLGLSVLVSFTVILIRFQSLIALAMSSSTFRDRPRGLILGASADVALTSPPV HPRCMNLISLGLNLGSWCQMNLDLGQQKKVAPHPPPS* # Gene 3 (Forward). 3 exons. 192 aa. Score = 69.518845 First 141210 141461 35.57 + 0 0 7.56 0.63 20.04 8.20 AA 1: 84 gene_3 Internal 141541 141744 38.35 + 0 0 -5.21 0.53 26.24 20.97 AA 85:152 gene_3 Terminal 144918 145037 -4.40 + 0 0 0.82 0.00 -0.24 6.69 AA 153:192 gene_3 chr4_random|SGP_v1.0_predicted_cDNA_3|576_NN ATGGCTCCGTGGCCTCACGAGAACAGCTCTCTTGCCCCATGGCCGGACCTCCCCACCCTG GCGCCCAATACCGCCAACACCAGTGGGCTGCCAGGGGTTCCGTGGGAGGCGGCCCTAGCC GGGGCCCTGCTGGCGCTGGCGGTGCTGGCCACCGTGGGAGGCAACCTGCTGGTCATCGTG GCCATCGCCTGGACTCCGAGACTCCAGACCATGACCAACGTGTTCGTGACTTCGCTGGCC GCAGCCGACCTGCTGTGGACCTCGGTGGACGTGCTGTGTGTGACCGCCAGCATCGAAACC CTGTGCGCCCTGGCCGTGGACCGCTACCTGGCTGTGACCAACCCGCTGCGTTACGGCGCA CTGGTCACCAAGCGCTGCGCCCGGACAGCTGTGGTCCTGGTGTGGGTCGTGTCGGCCGCG GTGTCGTTTGCGCCCATCATGAGCCAGTGGTGGCGCGAGGAGCTCGATAGATTTCCACAT ATGGGTGTTCCCTGTGAATTGGACCTGGTCTGTGCTGCTCTCTTTTCTCCAGGAGCCCAG GTTTTATTTCTCAGGATGTTTTCATACCAAAGATGA chr4_random|SGP_v1.0_predicted_protein_3|192_AA MAPWPHENSSLAPWPDLPTLAPNTANTSGLPGVPWEAALAGALLALAVLATVGGNLLVIV AIAWTPRLQTMTNVFVTSLAAADLLWTSVDVLCVTASIETLCALAVDRYLAVTNPLRYGA LVTKRCARTAVVLVWVVSAAVSFAPIMSQWWREELDRFPHMGVPCELDLVCAALFSPGAQ VLFLRMFSYQR* # Gene 4 (Forward). 3 exons. 119 aa. Score = 73.860843 First 162180 162324 28.28 + 0 1 4.65 2.99 10.34 13.02 AA 1: 49 gene_4 Internal 181861 182040 45.84 + 2 1 7.03 3.07 15.26 21.62 AA 49:109 gene_4 Terminal 184826 184857 -0.26 + 2 0 7.27 0.00 3.75 -2.90 AA 109:119 gene_4 chr4_random|SGP_v1.0_predicted_cDNA_4|357_NN ATGTCCGGGGGCAGCAGCTGCAGCCAGACCCCAAGCCGGGCCATCCCCGCCACTCGCCGG GTGGTGCTCGGCGACGGCGTGCAGCTCCCGCCCGGGGACTACAGCACGACCCCCGGCGGC ACCGTCTTCAGCACCACCCCGGGAGGTACCAGGATCATCTATGACCGGAAATTCCTGATG GAGTGTCGGAACTCACCTGTGACCAAAACACCCCCAAGGGATCTGCCCACCATTCCGGGG GTCACCAGCCCTTCCAGTGATGAGCCCCCCATGGAAGCCAGCCAGAGCCACCTGCGCAAT AGCCCAGAAGATAAGCGGGCGGGCGGTGAAGAGTCACAGTTTGAGATGGACATTTAA chr4_random|SGP_v1.0_predicted_protein_4|119_AA MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTVFSTTPGGTRIIYDRKFLM ECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMDI* # Gene 5 (Reverse). 1 exons. 49 aa. Score = 5.900992 Single 287188 287334 5.90 - 0 0 0.00 1.24 5.84 8.02 AA 1: 49 gene_5 chr4_random|SGP_v1.0_predicted_cDNA_5|147_NN ATGGGCCTGATGACCAATTGGGGCTTAAGGATCTACTTAGAGACTGGTGTCAACCTGGAA CCTGATGTCCACTTGGAGTCTGGTGTACACCTTGGGCCTGATGCCCACCTTGGCACAGGT GTACACTTTGGGCCTAGTGTGCACTGA chr4_random|SGP_v1.0_predicted_protein_5|49_AA MGLMTNWGLRIYLETGVNLEPDVHLESGVHLGPDAHLGTGVHFGPSVH* # Gene 6 (Reverse). 1 exons. 61 aa. Score = 8.749806 Single 307898 308080 8.75 - 0 0 0.00 3.84 11.62 1.51 AA 1: 61 gene_6 chr4_random|SGP_v1.0_predicted_cDNA_6|183_NN ATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCAACATCCTGGACATCATCCTCATA CACAAGGAAGCTCTTACCAAAGTCACGGAGAACAGGCAACATGTGGCAGAAGGGAAGACA GAGGTGCAGAGGCTGATGGCGTCATTATCACAGGAACAGGATTTCTTTGGCCACTTTGGC TGA chr4_random|SGP_v1.0_predicted_protein_6|61_AA MDLLVLSQGHQTNILDIILIHKEALTKVTENRQHVAEGKTEVQRLMASLSQEQDFFGHFG * # Gene 7 (Forward). 2 exons. 56 aa. Score = 2.540948 First 357025 357036 -8.20 + 0 0 4.72 -2.66 1.74 -1.20 AA 1: 4 gene_7 Terminal 361747 361902 10.74 + 0 0 -6.19 0.00 15.78 10.49 AA 5: 56 gene_7 chr4_random|SGP_v1.0_predicted_cDNA_7|168_NN ATGAGCTCGCAGGACGCCGATGTTGACATCAGGGAATACATTGGGAAAAGGGCCTCCCAG CATGTGAGTCAGAGCATCACAGAAGAGATTGAGACCCTGATGGGAGTCCTGGACAAGGAC GATGGGGAGAGCACCGCCAGCAGCGGGGGTGGGTACTGGAAGATTTAA chr4_random|SGP_v1.0_predicted_protein_7|56_AA MSSQDADVDIREYIGKRASQHVSQSITEEIETLMGVLDKDDGESTASSGGGYWKI* # Gene 8 (Forward). 6 exons. 347 aa. Score = 202.844403 First 369891 369893 -8.33 + 0 0 1.64 1.30 0.00 -0.30 AA 1: 1 gene_8 Internal 371346 371729 82.80 + 0 0 -0.99 -0.61 51.15 26.61 AA 2:129 gene_8 Internal 373140 373210 8.83 + 0 2 2.87 -0.07 9.28 3.37 AA 130:153 gene_8 Internal 373575 373680 16.18 + 1 0 0.87 -0.68 15.44 6.23 AA 153:188 gene_8 Internal 374379 374609 50.66 + 0 0 3.51 2.87 26.28 18.47 AA 189:265 gene_8 Terminal 376192 376437 52.72 + 0 0 2.26 0.00 35.05 14.76 AA 266:347 gene_8 chr4_random|SGP_v1.0_predicted_cDNA_8|1041_NN ATGCTGGAGGTGTGGTTCCAGAACTGCTATGCTCGCTACCACCAGGCCTTCGCCGACTGC AACCAGTCGGAGCGGGAGCTGCAGGGGCGCGAGAGCCAGCAGCTGGCCGCAGAGACCCAG GCGCTGGCACAGCCGACACAGCAAGACTCCACGTGCAGGGTGGGCGAGCGACTGCAAGAC ACGCACAGCTGGAAGTCAGAGCTGCAGCACGAGGTGGAGGTGCTGGCTGCAGAGACCGAC CTGCTGCTGGCCCAGAAGCAACGGCTGGAGCGTGCCCTGGATGCCATGGAGGTGCCCTTC TCCATCGCCACTGACAACATGCAGTGCAGCCAGCGCCACCAGCACGCCAACCTTGTGCGT GACTATGTGGAGACGGAGCTGCTGAAGGAAGCTGAGCCCATCCGGAACATTCAGGAGCTG CTGAAGAGAGCCATCGTGCAAGCAGTGAGCCAGATCCAACTGAACCGAGAGCACACGGAG ATCTGCGAGATGGACTGGTTGGACAAGGTGGAGGCCTACAACCTCGACGAGACTTGCGGG CGCCACCACAGCCAGAGCACCGAGCCCCGCAGCGCCTCCACCCCAGAGACCCGGACCAAG TTCACACAGGACAATCTGTGCCACGCCCAGCGCGAGCGCCTGGACTCGGCCAACCTGTGG GTGCTGGTGGACTGCATCCTTCGCGACACCTCCGAGGACCTGGGACTCCAGTGTGACGCC GTGAACCTGGCCTTCGGGCGCCGCTGTGAGGAACTGGAGGACGCGCGGCACAAGCTGCAG CACCACCTGCACAAGCCCCAGCTCACACCCCCCAACACCCCCAAGCTGGTGAGTGAGGTG GAGGAGCTGTACAAGTCCATCACAGCGCTGCGGGAGAAGCTTCTACAAGCGGAGCAGTCC CTGCGCAACCTCAAGGACATCCACATGAGCCTGGAGAAGGACGTCACTGCCATGACCAAC AGTCTCTTCATCGACCGCCAGAAGTGCATGGCCCATCGTACTTGCTACCCCACCATTCTG CAGCTGGCTGGCTACCAGTGA chr4_random|SGP_v1.0_predicted_protein_8|347_AA MLEVWFQNCYARYHQAFADCNQSERELQGRESQQLAAETQALAQPTQQDSTCRVGERLQD THSWKSELQHEVEVLAAETDLLLAQKQRLERALDAMEVPFSIATDNMQCSQRHQHANLVR DYVETELLKEAEPIRNIQELLKRAIVQAVSQIQLNREHTEICEMDWLDKVEAYNLDETCG RHHSQSTEPRSASTPETRTKFTQDNLCHAQRERLDSANLWVLVDCILRDTSEDLGLQCDA VNLAFGRRCEELEDARHKLQHHLHKPQLTPPNTPKLVSEVEELYKSITALREKLLQAEQS LRNLKDIHMSLEKDVTAMTNSLFIDRQKCMAHRTCYPTILQLAGYQ* # Gene 9 (Reverse). 2 exons. 91 aa. Score = 20.319767 Terminal 385870 386040 18.13 - 0 0 0.00 1.18 9.88 15.31 AA 35: 91 gene_9 Internal 391600 391701 2.19 - 0 0 -0.87 1.83 2.14 10.29 AA 1: 34 gene_9 chr4_random|SGP_v1.0_predicted_cDNA_9|273_NN TGTCTGTGTGCTATGAAGATTGCACACAGGGGTCCAGATGCATCCTGTTTTGAGAATGTT AATGGATACACCAGCTGCTGCTTTGGATTTCACCCATTGGTGGTGCAGCACCAGTTTGAA TTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGA ATTGAGCAAACAATTTGTACGTTGGTTGGTGTGTTTGCATTTGTTTTACTGGATTCTGCC AATAAGAAAGTGTCCCTGGACAGAGATACATAA chr4_random|SGP_v1.0_predicted_protein_9|91_AA CLCAMKIAHRGPDASCFENVNGYTSCCFGFHPLVVQHQFEFEYQTKVDGEIILHLYDKGG IEQTICTLVGVFAFVLLDSANKKVSLDRDT*