## date Sun Aug 18 19:01:50 2002 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr4_random - Length = 398820 bps # Optimal Gene Structure. 7 genes. Score = 82.753332 # Gene 1 (Reverse). 1 exons. 121 aa. Score = 10.813389 First 918 1279 10.81 - 0 2 0.80 2.76 34.19 0.00 AA 1:121 chr4_random_1 >chr4_random_1|geneid_v1.1_predicted_cDNA_1|362_NN ATGTCCCTAATGGTCTCGGCTGGCCGGGCTGGGGCCGTGTGGTCCCCAACCCACGTGCAG GTGACGGTGCTGCAGGCGCGGGCCTGGCGCCAAGGGCCCGGGGGCACGAGCGACGCGTAC GCGGTGATCCAGGTGGGCAAGGAGAAGTACGCCACTCCGTGTCGGAGCGCAGCCGTGGGC CGCGTGTGGCGCGAGGAGGCCACCTTCGAGCTGCCATCGCTGCTGTCCTCCGGACCCGCG GCCGCCGCCACCCTGCAGCTCACCGTGCTGCACCGCGCGCTGCTCGGCCTCGACAAGTTC CTGGGCCGCGCCGAGGTGGACCTGCGGGATCTGCACCGCGACCAGGGCCGCAGGAAGACG CA >chr4_random_1|geneid_v1.1_predicted_protein_1|121_AA MSLMVSAGRAGAVWSPTHVQVTVLQARAWRQGPGGTSDAYAVIQVGKEKYATPCRSAAVG RVWREEATFELPSLLSSGPAAAATLQLTVLHRALLGLDKFLGRAEVDLRDLHRDQGRRKT ca # Gene 2 (Reverse). 2 exons. 50 aa. Score = 0.453534 Terminal 54300 54436 1.22 - 2 0 0.00 3.07 12.21 0.00 AA 5: 50 chr4_random_2 First 55767 55779 -0.77 - 0 1 3.05 2.77 1.85 0.00 AA 1: 5 chr4_random_2 >chr4_random_2|geneid_v1.1_predicted_cDNA_2|150_NN ATGCAGACAACAGCTGAGCATTCCTCCGCACTACCGTTAAAAGTCATCTATGATGTCATG AGGGTGGCGGCCATCAACATTGCAGCCACAGACTGGGCAGGCCCCAAAATCTCTTCAACG GTTCCAGAGAGTATGCTGGCTAAAGATTGA >chr4_random_2|geneid_v1.1_predicted_protein_2|50_AA MQTTAEHSSALPLKVIYDVMRVAAINIAATDWAGPKISSTVPESMLAKD* # Gene 3 (Reverse). 7 exons. 338 aa. Score = 9.951219 Terminal 120331 120524 1.33 - 2 0 0.00 0.91 14.45 0.00 AA 274:338 chr4_random_3 Internal 121111 121253 2.40 - 1 1 1.21 4.32 10.20 0.00 AA 226:274 chr4_random_3 Internal 121741 121906 -0.38 - 2 2 4.19 0.44 4.62 0.00 AA 171:226 chr4_random_3 Internal 122756 122906 4.84 - 0 1 2.04 6.59 11.65 0.00 AA 121:171 chr4_random_3 Internal 123313 123447 0.27 - 0 0 0.74 1.91 9.19 0.00 AA 76:120 chr4_random_3 Internal 124736 124917 2.20 - 2 0 2.69 4.37 7.41 0.00 AA 15: 75 chr4_random_3 First 130924 130966 -0.70 - 0 1 0.00 3.28 5.82 0.00 AA 1: 15 chr4_random_3 >chr4_random_3|geneid_v1.1_predicted_cDNA_3|1014_NN ATGGCTGCAGAAAGCTCCAACCCTGGTGCAGAAGCGGAACCAGTCTGCATGACAAATGAA GGCCATCCCTGGGTTTCTCTCGTGGTGCAGAAGACTCGACTACAGATTTCACAGGATCCC TCCCTGAATTATGAGTACTTGCCCACCATGGGCCTGAAATCATTCATCCAGGCCTCTCTA GCACTCCTCTTTGGAAAGCACAGCCAAGCCATTGTGGAGAACAGGCTAGTGGGGGGCTGT GTTCCCACAGAACTGCATGGACTCGTCTTCCAGGACATGGGCTTTACAGTTTATGAATAC TCTGTCTGGGACCCCAAGAAGCTATGCATGGACCCCGACATACTCCTCAATGTGGTGGAG AGCAAGCAGATATTCCCATTTTTTGATATTCCCTGTCAAGGTTTATACACCAGTGACTTG GAAGAAGATACTAGAATCTTACAATACTTTGTGTCTCAAGGCTTTGAGTTCTTCTGCAGC CAGTCTCTGTCCAAGAATTTTGGCATTTATGATGAAGGAGTGGGGATGCTAGTGGTGGTG GCAGTCAACAACCAGCAGCTGCTGTGTGTCCTCTCCCAGCTGGAAGGATTAGCCCAGGCC CTGTGGCTAAACCCCCCCAACACGGGTGCACGTGTCATCACCTCCATCCTCTGCAACCCT GCTCTGCTGGGAGAATGGAAGCAGAGTCTAAAAGAAGTTGTAGAGAACATCATGCTAACC AAGGAAAAAGTGAAGGAGAAACTCCAGCTCCTGGGAACCCCTGGGTCCTGGGGTCACATC ACCGAGCAGAGTGGGACCCACGGCTATCTTGGACTCAACTCCCAGCAGGTGGAATACCTG GTCAGGAAGAAGCACATCTATATCCCCAAGAACGGTCAGATTAACTTCAGCTGTATCAAT GCCAACAACATAAATTACATCACTGAGGGCATCAATGAGGCTGTCCTCCTCACAGAGAGC TCAGAGATGTGTCTTCCAAAGGAAAAAAAAACACTGATTGGAATAAAACTTTAG >chr4_random_3|geneid_v1.1_predicted_protein_3|338_AA MAAESSNPGAEAEPVCMTNEGHPWVSLVVQKTRLQISQDPSLNYEYLPTMGLKSFIQASL ALLFGKHSQAIVENRLVGGCVPTELHGLVFQDMGFTVYEYSVWDPKKLCMDPDILLNVVE SKQIFPFFDIPCQGLYTSDLEEDTRILQYFVSQGFEFFCSQSLSKNFGIYDEGVGMLVVV AVNNQQLLCVLSQLEGLAQALWLNPPNTGARVITSILCNPALLGEWKQSLKEVVENIMLT KEKVKEKLQLLGTPGSWGHITEQSGTHGYLGLNSQQVEYLVRKKHIYIPKNGQINFSCIN ANNINYITEGINEAVLLTESSEMCLPKEKKTLIGIKL* # Gene 4 (Forward). 3 exons. 170 aa. Score = 9.604053 First 141210 141461 7.95 + 0 0 7.56 0.63 20.09 0.00 AA 1: 84 chr4_random_4 Internal 141541 141744 2.70 + 0 0 -5.21 0.53 26.27 0.00 AA 85:152 chr4_random_4 Terminal 143413 143466 -1.05 + 0 0 5.31 0.00 1.91 0.00 AA 153:170 chr4_random_4 >chr4_random_4|geneid_v1.1_predicted_cDNA_4|510_NN ATGGCTCCGTGGCCTCACGAGAACAGCTCTCTTGCCCCATGGCCGGACCTCCCCACCCTG GCGCCCAATACCGCCAACACCAGTGGGCTGCCAGGGGTTCCGTGGGAGGCGGCCCTAGCC GGGGCCCTGCTGGCGCTGGCGGTGCTGGCCACCGTGGGAGGCAACCTGCTGGTCATCGTG GCCATCGCCTGGACTCCGAGACTCCAGACCATGACCAACGTGTTCGTGACTTCGCTGGCC GCAGCCGACCTGCTGTGGACCTCGGTGGACGTGCTGTGTGTGACCGCCAGCATCGAAACC CTGTGCGCCCTGGCCGTGGACCGCTACCTGGCTGTGACCAACCCGCTGCGTTACGGCGCA CTGGTCACCAAGCGCTGCGCCCGGACAGCTGTGGTCCTGGTGTGGGTCGTGTCGGCCGCG GTGTCGTTTGCGCCCATCATGAGCCAGTGGTGGCGCGGCTTCTTGGGGAGTTTCTTAGGC CTGAAGGACAAGAAGCAACAACTCTGTTGA >chr4_random_4|geneid_v1.1_predicted_protein_4|170_AA MAPWPHENSSLAPWPDLPTLAPNTANTSGLPGVPWEAALAGALLALAVLATVGGNLLVIV AIAWTPRLQTMTNVFVTSLAAADLLWTSVDVLCVTASIETLCALAVDRYLAVTNPLRYGA LVTKRCARTAVVLVWVVSAAVSFAPIMSQWWRGFLGSFLGLKDKKQQLC* # Gene 5 (Forward). 3 exons. 119 aa. Score = 11.727277 First 162180 162324 3.71 + 0 1 4.65 2.99 10.30 0.00 AA 1: 49 chr4_random_5 Internal 181861 182040 7.16 + 2 1 7.03 3.07 15.26 0.00 AA 49:109 chr4_random_5 Terminal 184826 184857 0.86 + 2 0 7.27 0.00 3.74 0.00 AA 109:119 chr4_random_5 >chr4_random_5|geneid_v1.1_predicted_cDNA_5|357_NN ATGTCCGGGGGCAGCAGCTGCAGCCAGACCCCAAGCCGGGCCATCCCCGCCACTCGCCGG GTGGTGCTCGGCGACGGCGTGCAGCTCCCGCCCGGGGACTACAGCACGACCCCCGGCGGC ACCGTCTTCAGCACCACCCCGGGAGGTACCAGGATCATCTATGACCGGAAATTCCTGATG GAGTGTCGGAACTCACCTGTGACCAAAACACCCCCAAGGGATCTGCCCACCATTCCGGGG GTCACCAGCCCTTCCAGTGATGAGCCCCCCATGGAAGCCAGCCAGAGCCACCTGCGCAAT AGCCCAGAAGATAAGCGGGCGGGCGGTGAAGAGTCACAGTTTGAGATGGACATTTAA >chr4_random_5|geneid_v1.1_predicted_protein_5|119_AA MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTVFSTTPGGTRIIYDRKFLM ECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMDI* # Gene 6 (Reverse). 5 exons. 183 aa. Score = 5.429067 Terminal 282630 282731 0.57 - 0 0 0.00 5.29 5.99 0.00 AA 150:183 chr4_random_6 Internal 311906 311976 0.56 - 2 0 2.09 5.86 3.23 0.00 AA 126:149 chr4_random_6 Internal 312650 312673 1.06 - 2 1 5.48 2.41 4.56 0.00 AA 118:126 chr4_random_6 Internal 346005 346153 -0.29 - 1 1 1.52 3.41 4.38 0.00 AA 68:118 chr4_random_6 First 356395 356597 3.54 - 0 2 1.26 1.48 17.22 0.00 AA 1: 68 chr4_random_6 >chr4_random_6|geneid_v1.1_predicted_cDNA_6|549_NN ATGAAGTTATTCGGCTTCGGGAGCCGCAGGAGCCAAACGGCCCACGGCTCCATAGAACAT GTCTACACGGGTTCCGGATACCGAATCCCGGACTCCGAACTGCAGAAGATCCACAGGGCA GCTGCCAAGGGCGACCCCGCGGGGGTGGAGCGCTGCCTGGCGCGCAGGAGCGGAGACCTG GATGCCCTGGACAAGCAGCACAGGGACATAGAACCAAGCCCCAGGCCTGCTCAGCTACAC GACCGCCGCTGGGATCCGCACTTCCGGAGGAAAATGGCGAAGTGGGCGGGGCGGCGCATG CGCAGAGAGAAAAGCTGGTTCCCAAGGTCCTTGATGGTAACATCATTGGAAGTGGAAGAT GTAATCGACAAGAAAGCTGAGTCCACTCCTCCTCCCTCACCACCTGTAGGCTATGCTTTC CAGCCTGTGTCCAGGATTAGTCCTGATTTCCTGCTTCAGGTGCAGAAATACAGCTATTTC CAGTGCCAGCTGTGGAGCCAGTGCCAGCACCAGGGTCAAAGCCCCCTCCAGGGACAGCGC TGGAGCTAG >chr4_random_6|geneid_v1.1_predicted_protein_6|183_AA MKLFGFGSRRSQTAHGSIEHVYTGSGYRIPDSELQKIHRAAAKGDPAGVERCLARRSGDL DALDKQHRDIEPSPRPAQLHDRRWDPHFRRKMAKWAGRRMRREKSWFPRSLMVTSLEVED VIDKKAESTPPPSPPVGYAFQPVSRISPDFLLQVQKYSYFQCQLWSQCQHQGQSPLQGQR WS* # Gene 7 (Forward). 6 exons. 381 aa. Score = 34.774795 First 361627 361722 -2.24 + 0 0 1.44 0.76 3.61 0.00 AA 1: 32 chr4_random_7 Internal 371331 371729 15.30 + 0 0 0.27 -0.61 51.26 0.00 AA 33:165 chr4_random_7 Internal 373140 373210 0.39 + 0 2 2.87 -0.07 9.28 0.00 AA 166:189 chr4_random_7 Internal 373575 373680 1.29 + 1 0 0.87 -0.68 15.44 0.00 AA 189:224 chr4_random_7 Internal 374379 374609 9.34 + 0 0 3.51 2.87 26.28 0.00 AA 225:301 chr4_random_7 Internal 376192 376433 10.69 + 0 2 2.26 0.74 34.74 0.00 AA 302:381 chr4_random_7 >chr4_random_7|geneid_v1.1_predicted_cDNA_7|1145_NN ATGCTGGTCAACTTCCCCAACGAGCCTCTGCTGCCTGGGAACAGCAAGGCCAGAGCTACA CCGTCCTGCACTTGGCAGCCATGTACCTTGGAGATGCCTGGCCACCGCCAGCTGGAGGTG TGGTTCCAGAACTGCTATGCTCGCTACCACCAGGCCTTCGCCGACTGCAACCAGTCGGAG CGGGAGCTGCAGGGGCGCGAGAGCCAGCAGCTGGCCGCAGAGACCCAGGCGCTGGCACAG CCGACACAGCAAGACTCCACGTGCAGGGTGGGCGAGCGACTGCAAGACACGCACAGCTGG AAGTCAGAGCTGCAGCACGAGGTGGAGGTGCTGGCTGCAGAGACCGACCTGCTGCTGGCC CAGAAGCAACGGCTGGAGCGTGCCCTGGATGCCATGGAGGTGCCCTTCTCCATCGCCACT GACAACATGCAGTGCAGCCAGCGCCACCAGCACGCCAACCTTGTGCGTGACTATGTGGAG ACGGAGCTGCTGAAGGAAGCTGAGCCCATCCGGAACATTCAGGAGCTGCTGAAGAGAGCC ATCGTGCAAGCAGTGAGCCAGATCCAACTGAACCGAGAGCACACGGAGATCTGCGAGATG GACTGGTTGGACAAGGTGGAGGCCTACAACCTCGACGAGACTTGCGGGCGCCACCACAGC CAGAGCACCGAGCCCCGCAGCGCCTCCACCCCAGAGACCCGGACCAAGTTCACACAGGAC AATCTGTGCCACGCCCAGCGCGAGCGCCTGGACTCGGCCAACCTGTGGGTGCTGGTGGAC TGCATCCTTCGCGACACCTCCGAGGACCTGGGACTCCAGTGTGACGCCGTGAACCTGGCC TTCGGGCGCCGCTGTGAGGAACTGGAGGACGCGCGGCACAAGCTGCAGCACCACCTGCAC AAGCCCCAGCTCACACCCCCCAACACCCCCAAGCTGGTGAGTGAGGTGGAGGAGCTGTAC AAGTCCATCACAGCGCTGCGGGAGAAGCTTCTACAAGCGGAGCAGTCCCTGCGCAACCTC AAGGACATCCACATGAGCCTGGAGAAGGACGTCACTGCCATGACCAACAGTCTCTTCATC GACCGCCAGAAGTGCATGGCCCATCGTACTTGCTACCCCACCATTCTGCAGCTGGCTGGC TACCA >chr4_random_7|geneid_v1.1_predicted_protein_7|381_AA MLVNFPNEPLLPGNSKARATPSCTWQPCTLEMPGHRQLEVWFQNCYARYHQAFADCNQSE RELQGRESQQLAAETQALAQPTQQDSTCRVGERLQDTHSWKSELQHEVEVLAAETDLLLA QKQRLERALDAMEVPFSIATDNMQCSQRHQHANLVRDYVETELLKEAEPIRNIQELLKRA IVQAVSQIQLNREHTEICEMDWLDKVEAYNLDETCGRHHSQSTEPRSASTPETRTKFTQD NLCHAQRERLDSANLWVLVDCILRDTSEDLGLQCDAVNLAFGRRCEELEDARHKLQHHLH KPQLTPPNTPKLVSEVEELYKSITALREKLLQAEQSLRNLKDIHMSLEKDVTAMTNSLFI DRQKCMAHRTCYPTILQLAGYa