## date Wed Apr 10 11:03:05 2002 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr9_random - Length = 595734 bps # Optimal Gene Structure. 5 genes. Score = 61.786219 # Gene 1 (Reverse). 2 exons. 182 aa. Score = 4.698026 Terminal 145459 145885 5.51 - 1 0 0.00 4.23 21.17 0.00 AA 40:182 gene_1 First 146158 146276 -0.81 - 0 2 4.60 1.70 2.28 0.00 AA 1: 40 gene_1 >chr9_random|geneid_v1.1_predicted_cDNA_1|546_NN ATGAAGAAAAAGTTCTCCTCTTATTTGGGGAATGGATTTCAGAAGAGACCAGAAGATGTT CTCGTGTTCTCACCACAGGGAAGGCAGAAGCACAGAGCCCCACAGGCTAAGAAAATGAGA GCATTGGCAACCCGTATGGCCCAAGACACATGCAAAAGCAAGTCCCAGGTGCCTCCTTCA CATGATGCTGGCCTCAAAGACCCCATGAAGAGCAAAAAGCAGCCACTCTCTCAAAATAAC AGAACTGCCTGCTTCATAAAAGAGCAACCACAAGCCCAAGAGAAAGATTCTGTGAATCCA TCTAAGGACGTAGACCCCAGCAAGGGCATCTCTGTTCCATGCCAAAATCAAGAGGTTTCC ACCAACACCATAGAACAAGGTCCTAGTTCCAGCCCAGCTAGTGATAGTGGAATGGCATGT GCTGATGAGACCAGATCAAAAGATGTTGCTCTAAAGCCAGATGGGAACACTGGAAAACAA ATTCCCCCAAAACACATGGAATGTGCAGGAAGCTTCGAAGGCGAGTTCACAAAGCCAACT TCTTAG >chr9_random|geneid_v1.1_predicted_protein_1|182_AA MKKKFSSYLGNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRALATRMAQDTCKSKSQVPPS HDAGLKDPMKSKKQPLSQNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISVPCQNQEVS TNTIEQGPSSSPASDSGMACADETRSKDVALKPDGNTGKQIPPKHMECAGSFEGEFTKPT S* # Gene 2 (Forward). 13 exons. 722 aa. Score = 36.003378 First 161310 161389 -0.20 + 0 2 -0.33 4.53 6.95 0.00 AA 1: 27 gene_2 Internal 162816 163047 5.69 + 1 0 1.12 3.72 19.47 0.00 AA 27:104 gene_2 Internal 163348 163495 6.06 + 0 1 7.08 3.29 12.09 0.00 AA 105:154 gene_2 Internal 163856 163961 3.63 + 2 2 6.08 3.81 6.74 0.00 AA 154:189 gene_2 Internal 175948 176087 -0.00 + 1 1 -2.68 5.16 10.02 0.00 AA 189:236 gene_2 Internal 211528 211658 3.76 + 2 0 4.32 4.53 9.88 0.00 AA 236:279 gene_2 Internal 214601 214865 7.21 + 0 1 6.63 4.63 14.89 0.00 AA 280:368 gene_2 Internal 216323 216546 4.41 + 2 0 4.28 4.55 11.53 0.00 AA 368:442 gene_2 Internal 217768 217895 0.06 + 0 2 -0.79 0.96 13.63 0.00 AA 443:485 gene_2 Internal 238824 239015 0.77 + 1 2 3.21 2.96 6.44 0.00 AA 485:549 gene_2 Internal 239308 239542 3.42 + 1 0 4.35 5.00 8.28 0.00 AA 549:627 gene_2 Internal 241752 241901 2.57 + 0 0 3.73 5.38 6.51 0.00 AA 628:677 gene_2 Terminal 243321 243455 -1.39 + 0 0 3.51 0.00 5.01 0.00 AA 678:722 gene_2 >chr9_random|geneid_v1.1_predicted_cDNA_2|2166_NN ATGTCAGGAGGCCAGATTCCAGATGAGGACATCACAGCTTCCAGTCAGTGGTCAGAGTCC ACAGCTGCCAAATATGGAAGGCTGGACTCAGAAGAAGGGGATGGAGCCTGGTGCCCTGAG ATTCCAGTGGAACCTGATGACCTGAAGGAGTTTCTGCAGATTGACTTGCACACCCTCCAT TTTATCACTCTGGTGGGGACCCAGGGGCGCCATGCAGGAGGTCATGGCATCGAGTTTGCC CCCATGTACAAGATCAATTACAGTCGGGATGGCACTCGCTGGATCTCTTGGCGGAACCGT CATGGGAAACAGGTGCTGGATGGAAATAGTAACCCCTATGACATTTTCCTAAAGGACTTG GAGCCGCCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGACCACTCCATGAAT GTGTGTATGAGAGTGGAGCTTTACGGCTGTGTCTGGCTAGATGGCTTGGTGTCTTACAAT GCTCCAGCTGGGCAGCAGTTTGTACTCCCTGGAGGTTCCATCATTTATCTGAATGATTCT GTCTATGATGGAGCTGTTGGATACAGGCCTAAAGAAATTTCAGAGCAAGGGGACAATAGC AAAGGCCACAGCCACATCAAGTTCAAAAATGTCTTGAACTTTGTTGGATTGAAGAAATCC AAAGAAAGAGTAAGAGATCAGGACTTGGAGAAGGAGAGGCTACAAGATCCAATGCTTAAA GTTGATGACAGCAACACTCGGATCCTGATTGGCTGCTTGGTGGCCATCATCTTTATCCTC CTGGCCATCATTGTCATCATCCTCTGGAGGCAGTTCTGGCAGAAAATGCTGGAGAAGGCT TCTCGGAGGATGCTGGATGATGAAATGACAGTCAGCCTTTCCCTGCCAAGTGATTCTAGC ATGTTCAACAATAACCGCTCCTCATCACCTAGTGAACAAGGGTCCAACTCGACTTACGAT CGCATCTTTCCCCTTCGCCCTGACTACCAGGAGCCATCCAGGCTGATACGAAAACTCCCA GAATTTGCTCCAGGGGAGGAGGAGTCAGGTGAGGATGATGTGGTGGGCAGGGTGTCAAGG GAGAAACCTCAGCAAGCATCAGGCTGCAGCGGTGTTGTGAAGCCAGTCCAGCCCAGTGGC CCTGAGGGGGTGCCCCACTATGCAGAGGCTGACATAGTGAACCTCCAAGGAGTGACAGGA GGCAACACATACTCAGTGCCTGCCGTCACCATGGACCTGCTCTCAGGAAAAGATGTGGCT GTGGAGGAGTTCCCCAGGAAACTCCTAACTTTCAAAGAGAAGCTGGGAGAAGGACAGTTT GGGGAGGTTCATCTCTGTGAAGTGGAGGGAATGGAAAAATTCAAAGACAAAGATTTTGCC CTAGATGTCAGTGCCAACCAGCCTGTCCTGGTGGCTGTGAAAATGCTCCGAGCAGATGCC AACAAGAATGCCAGGAATGATTTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGAC CCAAACATCATCCATCTATTAGCTGTGTGTATCACTGATGACCCTCTCTGTATGATCACT GAATACATGGAGAATGGAGATCTCAATCAGTTTCTTTCCCGCCACGAGCCCCCTAATTCT TCCTCCAGCGATGTACGCACTGTCAGTTACACCAATCTGAAGTTTATGGCTACCCAAATT GCCTCTGGCATGAAGTACCTTTCCTCTCTTAATTTTGTTCACCGAGATCTGGCCACACGA AACTGTTTAGTGGGTAAGAACTACACAATCAAGATAGCTGACTTTGGAATGAGCAGGAAC CTGTACAGTGGTGACTATTACCGGATCCAGGGCCGGGCAGTGCTCCCTATCCGCTGGATG TCTTGGGAGAGTATCTTGCTGGGCAAGTTCACTACAGCAAGTGATGTGTGGGCCTTTGGG GTTACTTTGTGGGAGACTTTCACCTTTTGTCAAGAACAGCCCTATTCCCAGCTGTCAGAT GAACAGGTTATTGAGAATACTGGAGAGTTCTTCCGAGACCAAGGGAGGCAGACTTACCTC CCTCAACCAGCCATTTGTCCTGACTCTGTGTATAAGCTGATGCTCAGCTGCTGGAGAAGA GATACGAAGAACCGTCCCTCATTCCAAGAAATCCACCTTCTGCTCCTTCAACAAGGCGAC GAGTGA >chr9_random|geneid_v1.1_predicted_protein_2|722_AA MSGGQIPDEDITASSQWSESTAAKYGRLDSEEGDGAWCPEIPVEPDDLKEFLQIDLHTLH FITLVGTQGRHAGGHGIEFAPMYKINYSRDGTRWISWRNRHGKQVLDGNSNPYDIFLKDL EPPIVARFVRFIPVTDHSMNVCMRVELYGCVWLDGLVSYNAPAGQQFVLPGGSIIYLNDS VYDGAVGYRPKEISEQGDNSKGHSHIKFKNVLNFVGLKKSKERVRDQDLEKERLQDPMLK VDDSNTRILIGCLVAIIFILLAIIVIILWRQFWQKMLEKASRRMLDDEMTVSLSLPSDSS MFNNNRSSSPSEQGSNSTYDRIFPLRPDYQEPSRLIRKLPEFAPGEEESGEDDVVGRVSR EKPQQASGCSGVVKPVQPSGPEGVPHYAEADIVNLQGVTGGNTYSVPAVTMDLLSGKDVA VEEFPRKLLTFKEKLGEGQFGEVHLCEVEGMEKFKDKDFALDVSANQPVLVAVKMLRADA NKNARNDFLKEIKIMSRLKDPNIIHLLAVCITDDPLCMITEYMENGDLNQFLSRHEPPNS SSSDVRTVSYTNLKFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSRN LYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWETFTFCQEQPYSQLSD EQVIENTGEFFRDQGRQTYLPQPAICPDSVYKLMLSCWRRDTKNRPSFQEIHLLLLQQGD E* # Gene 3 (Reverse). 4 exons. 286 aa. Score = 8.356940 Terminal 253653 253949 3.48 - 0 0 0.00 0.97 19.75 0.00 AA 188:286 gene_3 Internal 255597 255902 2.39 - 0 0 1.06 2.45 14.46 0.00 AA 86:187 gene_3 Internal 273472 273666 5.25 - 0 0 5.66 5.40 10.29 0.00 AA 21: 85 gene_3 First 285204 285263 -2.77 - 0 0 2.54 -1.03 4.56 0.00 AA 1: 20 gene_3 >chr9_random|geneid_v1.1_predicted_cDNA_3|858_NN ATGACCATAATCCAGGATGTCCTTCCAGAGAGACCCGAGCTCTTTGTAAGCAGCCATCCA ATTCGGGAACTGGAGCCTCTCCTCTGTCACAGTGACAATCCATCTCAGCTCATCTGGACA TCATCTCGCAGTGCAAGGAAATCTAATTTCAGCCTCGAGGACTTCCAGCACAGCAAAGGC AAGGAACCCTACAGCTCTTCCAAATATGCCACTGACCTTTTGAGTGTGGCTTTGAACAGG AACTTCAACCAGCAGTGTTATGCTGCACAATCACATGAGAAAAAAAATCCATCAGCAAGA GATATACCTTTGCTTAAGTTCCTTGGAGGCCCGGAAGACCGACTGCAGGTTGCTGACATC CACCTGGACAATGGTGACCTCAGCAGTGGGGTGAGAGGCCAGCAGAGCAGCACAGACAGC TTCTGCCTTGCTCATGTTCCTGCACGCCAAACACAGATGAAGCTCATCATCTTCCGCCAG CAGCCGCTTGCAGAGGGCCAGGCCAATGCCACTGGGAGGACAATTCAGACACAAGATGTG GGTTATCTGGGATGGCATCAGACTCCGGGGAACCTAGGCAAAGCCAGGGGCGGGCGCTTC CGGGGTCCGTTCGTGGAGGGTCGCAGACCCCTGCTCTCTCGGACCCCTGATCCGCTGCCG CCTCTGCCAACCCAAAGGAGGCCTCACCTGCTAGCCCCGGTGATCAAAACCACCTTTCGC ATCTTCGCGCACTCACACTTCCAAGCAGTGAAGCAAACACCGCCGCTGCTTTCGGAAGTC CTACGATTTCGGGCCGCCTCACCCGTCACCAATCAGAGTACGGCCACGCCCCGCCTCCCG TTGCGTCATCGAGTCTGA >chr9_random|geneid_v1.1_predicted_protein_3|286_AA MTIIQDVLPERPELFVSSHPIRELEPLLCHSDNPSQLIWTSSRSARKSNFSLEDFQHSKG KEPYSSSKYATDLLSVALNRNFNQQCYAAQSHEKKNPSARDIPLLKFLGGPEDRLQVADI HLDNGDLSSGVRGQQSSTDSFCLAHVPARQTQMKLIIFRQQPLAEGQANATGRTIQTQDV GYLGWHQTPGNLGKARGGRFRGPFVEGRRPLLSRTPDPLPPLPTQRRPHLLAPVIKTTFR IFAHSHFQAVKQTPPLLSEVLRFRAASPVTNQSTATPRLPLRHRV* # Gene 4 (Reverse). 2 exons. 73 aa. Score = 9.424411 Terminal 342365 342379 -5.17 - 0 0 0.00 0.56 -1.27 0.00 AA 69: 73 gene_4 First 343167 343370 14.60 - 0 0 2.74 10.00 29.87 0.00 AA 1: 68 gene_4 >chr9_random|geneid_v1.1_predicted_cDNA_4|219_NN ATGGAGCAGTGGCGGCAGTGCGGCCGCTGGCTCATCGATTGCAAGGTCCTGCCGCCCAAC CACCGGGTGGTGTGGCCCTCGGCCGTGGTCTTCGACCTGGCGCAGGCGCTGCGCGACGGG GTCCTTCTGTGCCAGCTGCTGCACAACCTCTCCCCCGGCTCCATCGACCTCAAGGACATC AACTTCCGGCCGCAGATGTCCCAGAGGGAACTTGGCTAA >chr9_random|geneid_v1.1_predicted_protein_4|73_AA MEQWRQCGRWLIDCKVLPPNHRVVWPSAVVFDLAQALRDGVLLCQLLHNLSPGSIDLKDI NFRPQMSQRELG* # Gene 5 (Forward). 4 exons. 140 aa. Score = 3.303464 First 537431 537481 -0.60 + 0 0 1.56 4.81 2.69 0.00 AA 1: 17 gene_5 Internal 541616 541679 -1.15 + 0 1 2.85 0.99 3.86 0.00 AA 18: 39 gene_5 Internal 543598 543794 4.32 + 2 0 4.89 6.11 8.05 0.00 AA 39:104 gene_5 Terminal 575653 575760 0.74 + 0 0 4.14 0.00 9.38 0.00 AA 105:140 gene_5 >chr9_random|geneid_v1.1_predicted_cDNA_5|420_NN ATGGAAATGTTCGCATTTGCTAATGTAAACAATTGCCAGCCCCACCTTATGATACGAACC ATTAAGCCATTATTGGTAACAGCAGGGGTTAATCACAGATACAAGTTGAGTGCAGTGTTT AAAATGAAGAAGTTTAATTTCCGAAAAGTTTTGGATGGCTTAACTGCCTCCTCCCCTGGC AGTGGTAGCAGCAGTGGCAGTAACAGTGGTGGTGGGGCTGGAAGTGGTTCCGTACATCCG GCGGGGACTGCAGGGGTTCTCAGAGAGGAAATTCAGGAAACTTTGACTTCGGAGTATTTC CAGATTTGCAAGACAGTTCGGCATGGTTTTCCTCATCAGCCCACAGCATTAGCCTTTGAT CCAGTTCAGAAAATCTTGGCTATTGGGACGAGAACAGGTGCTATACGAATGTATCCTTAA >chr9_random|geneid_v1.1_predicted_protein_5|140_AA MEMFAFANVNNCQPHLMIRTIKPLLVTAGVNHRYKLSAVFKMKKFNFRKVLDGLTASSPG SGSSSGSNSGGGAGSGSVHPAGTAGVLREEIQETLTSEYFQICKTVRHGFPHQPTALAFD PVQKILAIGTRTGAIRMYP*