## date Sun Apr 28 11:14:35 2002 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr9_random - Length = 595734 bps # Optimal Gene Structure. 9 genes. Score = 723.625256 # Gene 1 (Reverse). 1 exons. 137 aa. Score = 33.204157 Single 145459 145869 33.20 - 0 0 0.00 0.27 20.82 18.76 AA 1:137 gene_1 chr9_random|SGP_v1.0_predicted_cDNA_1|411_NN ATGGCCCAAGACACATGCAAAAGCAAGTCCCAGGTGCCTCCTTCACATGATGCTGGCCTC AAAGACCCCATGAAGAGCAAAAAGCAGCCACTCTCTCAAAATAACAGAACTGCCTGCTTC ATAAAAGAGCAACCACAAGCCCAAGAGAAAGATTCTGTGAATCCATCTAAGGACGTAGAC CCCAGCAAGGGCATCTCTGTTCCATGCCAAAATCAAGAGGTTTCCACCAACACCATAGAA CAAGGTCCTAGTTCCAGCCCAGCTAGTGATAGTGGAATGGCATGTGCTGATGAGACCAGA TCAAAAGATGTTGCTCTAAAGCCAGATGGGAACACTGGAAAACAAATTCCCCCAAAACAC ATGGAATGTGCAGGAAGCTTCGAAGGCGAGTTCACAAAGCCAACTTCTTAG chr9_random|SGP_v1.0_predicted_protein_1|137_AA MAQDTCKSKSQVPPSHDAGLKDPMKSKKQPLSQNNRTACFIKEQPQAQEKDSVNPSKDVD PSKGISVPCQNQEVSTNTIEQGPSSSPASDSGMACADETRSKDVALKPDGNTGKQIPPKH MECAGSFEGEFTKPTS* # Gene 2 (Forward). 13 exons. 587 aa. Score = 290.522482 First 151816 151897 -1.68 + 0 1 -0.50 2.65 2.61 2.99 AA 1: 28 gene_2 Internal 161287 161389 19.21 + 2 2 3.69 4.53 6.90 9.80 AA 28: 62 gene_2 Internal 162816 163047 52.63 + 1 0 1.12 3.72 19.38 30.74 AA 62:139 gene_2 Internal 163348 163495 37.78 + 0 1 7.08 3.29 12.06 17.54 AA 140:189 gene_2 Internal 163856 163961 24.07 + 2 2 6.08 3.81 6.74 11.85 AA 189:224 gene_2 Internal 167989 168172 30.49 + 1 0 -0.59 2.93 12.18 24.76 AA 224:285 gene_2 Internal 176036 176087 -5.45 + 0 1 -1.26 5.16 6.09 -5.20 AA 286:303 gene_2 Internal 210300 210362 4.14 + 2 1 4.44 0.20 3.44 4.90 AA 303:324 gene_2 Internal 211528 211658 23.26 + 2 0 4.32 4.53 9.88 8.81 AA 324:367 gene_2 Internal 214601 214865 44.72 + 0 1 6.63 4.63 14.94 21.69 AA 368:456 gene_2 Internal 216323 216546 43.29 + 2 0 4.28 4.55 11.54 26.58 AA 456:530 gene_2 Internal 217768 217895 20.76 + 0 2 -0.79 0.96 13.62 14.32 AA 531:573 gene_2 Terminal 217928 217970 -2.69 + 1 0 5.26 0.00 -0.10 1.98 AA 573:587 gene_2 chr9_random|SGP_v1.0_predicted_cDNA_2|1761_NN ATGATCCTGATTCCCAGAATGCTCTTGGTGCTGTTCCTGCTGCTGCCTATCTTGAGTTCT GCAAAAGCTCAGGTTAATCCAGCTATATGCCGCTATCCTCTGGGCATGTCAGGAGGCCAG ATTCCAGATGAGGACATCACAGCTTCCAGTCAGTGGTCAGAGTCCACAGCTGCCAAATAT GGAAGGCTGGACTCAGAAGAAGGGGATGGAGCCTGGTGCCCTGAGATTCCAGTGGAACCT GATGACCTGAAGGAGTTTCTGCAGATTGACTTGCACACCCTCCATTTTATCACTCTGGTG GGGACCCAGGGGCGCCATGCAGGAGGTCATGGCATCGAGTTTGCCCCCATGTACAAGATC AATTACAGTCGGGATGGCACTCGCTGGATCTCTTGGCGGAACCGTCATGGGAAACAGGTG CTGGATGGAAATAGTAACCCCTATGACATTTTCCTAAAGGACTTGGAGCCGCCCATTGTA GCCAGATTTGTCCGGTTCATTCCAGTCACCGACCACTCCATGAATGTGTGTATGAGAGTG GAGCTTTACGGCTGTGTCTGGCTAGATGGCTTGGTGTCTTACAATGCTCCAGCTGGGCAG CAGTTTGTACTCCCTGGAGGTTCCATCATTTATCTGAATGATTCTGTCTATGATGGAGCT GTTGGATACAGCATGACAGAAGGGCTAGGCCAATTGACCGATGGTGTGTCTGGCCTGGAC GATTTCACCCAGACCCATGAATACCACGTGTGGCCCGGCTATGACTATGTGGGCTGGCGG AACGAGAGTGCCACCAATGGCTACATTGAGATCATGTTTGAATTTGACCGCATCAGGAAT TTCACTACCATGAAGAAATCCAAAGAAAGAGTAAGAGATCAGGACTTGGAGAAGGAGAGG CTACAAGATGCTGCAATGTACAACAACTCTGAAGCCCTGCCCACCTCTCCTATGGCACCC ACAACCTATGATCCAATGCTTAAAGTTGATGACAGCAACACTCGGATCCTGATTGGCTGC TTGGTGGCCATCATCTTTATCCTCCTGGCCATCATTGTCATCATCCTCTGGAGGCAGTTC TGGCAGAAAATGCTGGAGAAGGCTTCTCGGAGGATGCTGGATGATGAAATGACAGTCAGC CTTTCCCTGCCAAGTGATTCTAGCATGTTCAACAATAACCGCTCCTCATCACCTAGTGAA CAAGGGTCCAACTCGACTTACGATCGCATCTTTCCCCTTCGCCCTGACTACCAGGAGCCA TCCAGGCTGATACGAAAACTCCCAGAATTTGCTCCAGGGGAGGAGGAGTCAGGTGAGGAT GATGTGGTGGGCAGGGTGTCAAGGGAGAAACCTCAGCAAGCATCAGGCTGCAGCGGTGTT GTGAAGCCAGTCCAGCCCAGTGGCCCTGAGGGGGTGCCCCACTATGCAGAGGCTGACATA GTGAACCTCCAAGGAGTGACAGGAGGCAACACATACTCAGTGCCTGCCGTCACCATGGAC CTGCTCTCAGGAAAAGATGTGGCTGTGGAGGAGTTCCCCAGGAAACTCCTAACTTTCAAA GAGAAGCTGGGAGAAGGACAGTTTGGGGAGGTTCATCTCTGTGAAGTGGAGGGAATGGAA AAATTCAAAGACAAAGATTTTGCCCTAGATGTCAGTGCCAACCAGCCTGTCCTGGTGGCT GTGAAAATGCTCCGAGCAGATGCCAACAAGAATGCCAGGTATTTCATCTTTAGGACCAGG AATACTCCTGGATACTTCTGA chr9_random|SGP_v1.0_predicted_protein_2|587_AA MILIPRMLLVLFLLLPILSSAKAQVNPAICRYPLGMSGGQIPDEDITASSQWSESTAAKY GRLDSEEGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKI NYSRDGTRWISWRNRHGKQVLDGNSNPYDIFLKDLEPPIVARFVRFIPVTDHSMNVCMRV ELYGCVWLDGLVSYNAPAGQQFVLPGGSIIYLNDSVYDGAVGYSMTEGLGQLTDGVSGLD DFTQTHEYHVWPGYDYVGWRNESATNGYIEIMFEFDRIRNFTTMKKSKERVRDQDLEKER LQDAAMYNNSEALPTSPMAPTTYDPMLKVDDSNTRILIGCLVAIIFILLAIIVIILWRQF WQKMLEKASRRMLDDEMTVSLSLPSDSSMFNNNRSSSPSEQGSNSTYDRIFPLRPDYQEP SRLIRKLPEFAPGEEESGEDDVVGRVSREKPQQASGCSGVVKPVQPSGPEGVPHYAEADI VNLQGVTGGNTYSVPAVTMDLLSGKDVAVEEFPRKLLTFKEKLGEGQFGEVHLCEVEGME KFKDKDFALDVSANQPVLVAVKMLRADANKNARYFIFRTRNTPGYF* # Gene 3 (Reverse). 5 exons. 129 aa. Score = 29.326313 Terminal 220428 220550 6.66 - 0 0 0.00 6.45 6.03 3.12 AA 89:129 gene_3 Internal 227361 227459 13.80 - 0 0 3.63 5.39 2.70 8.95 AA 56: 88 gene_3 Internal 228530 228586 9.56 - 0 0 2.85 5.20 4.54 3.64 AA 37: 55 gene_3 Internal 229318 229422 9.63 - 0 0 2.73 4.08 2.33 8.61 AA 2: 36 gene_3 First 232565 232567 -10.32 - 0 0 1.30 0.66 0.00 -0.30 AA 1: 1 gene_3 chr9_random|SGP_v1.0_predicted_cDNA_3|387_NN ATGGGTCTCTATTCCAATGTGGCCTGTCCAGGTACAGCATTGACCAATTTGACATATGGA ATTCTGCCTCCGTTTATATGGACGCTGTTGATGCCGGCAATATTGCTACTTCGCTTTTTT GCAAATGCATTCACTTTGACACCATATAATGGAACAGAAGCTCTGGTATGGCTTTTCCAC CAAAAGCCTGAATCTCTCAATCCTCTGATCAAATATATGAGTGCCACCACTGGCTTTGGA AGAAATTACATTATGACCCAGAAGATGGACCTAGATGAAGACACTGCTGAAAAATTTTAT CAAAAGTTACTGGAACTGGAAGAGCACATTAGGGTCACTATTCAAAAAACAGATAATCAG GCCAGGCTCAGTGGCTCATGCCTATAA chr9_random|SGP_v1.0_predicted_protein_3|129_AA MGLYSNVACPGTALTNLTYGILPPFIWTLLMPAILLLRFFANAFTLTPYNGTEALVWLFH QKPESLNPLIKYMSATTGFGRNYIMTQKMDLDEDTAEKFYQKLLELEEHIRVTIQKTDNQ ARLSGSCL* # Gene 4 (Forward). 4 exons. 282 aa. Score = 122.858937 First 238732 239015 28.58 + 0 2 0.96 2.96 3.47 31.39 AA 1: 95 gene_4 Internal 239308 239584 53.64 + 1 0 4.35 -1.24 7.07 53.75 AA 95:187 gene_4 Internal 241752 241901 28.80 + 0 0 3.73 5.38 6.53 18.54 AA 188:237 gene_4 Terminal 243321 243455 11.83 + 0 0 3.51 0.00 4.97 14.20 AA 238:282 gene_4 chr9_random|SGP_v1.0_predicted_cDNA_4|846_NN ATGTCCAGGAATAGGCCTTGGTGTGCATTCTTCTCTCTCTTGATTCTGACTCTGGCAACT TCTGAGTTTATCTATGTCTGTATCCTCCCAAGGAATGATTTTCTTAAGGAGATAAAGATC ATGTCTCGGCTCAAGGACCCAAACATCATCCATCTATTAGCTGTGTGTATCACTGATGAC CCTCTCTGTATGATCACTGAATACATGGAGAATGGAGATCTCAATCAGTTTCTTTCCCGC CACGAGCCCCCTAATTCTTCCTCCAGCGATGTACGCACTGTCAGTTACACCAATCTGAAG TTTATGGCTACCCAAATTGCCTCTGGCATGAAGTACCTTTCCTCTCTTAATTTTGTTCAC CGAGATCTGGCCACACGAAACTGTTTAGTGGGTAAGAACTACACAATCAAGATAGCTGAC TTTGGAATGAGCAGGAACCTGTACAGTGGTGACTATTACCGGATCCAGGGCCGGGCAGTG CTCCCTATCCGCTGGATGTCTTGGGAGAGTATCTTGCTGGTAAGTTCTCAGCATTTTAAA GCCCTGTCTAACAACTGGCTTGGCAAGTTCACTACAGCAAGTGATGTGTGGGCCTTTGGG GTTACTTTGTGGGAGACTTTCACCTTTTGTCAAGAACAGCCCTATTCCCAGCTGTCAGAT GAACAGGTTATTGAGAATACTGGAGAGTTCTTCCGAGACCAAGGGAGGCAGACTTACCTC CCTCAACCAGCCATTTGTCCTGACTCTGTGTATAAGCTGATGCTCAGCTGCTGGAGAAGA GATACGAAGAACCGTCCCTCATTCCAAGAAATCCACCTTCTGCTCCTTCAACAAGGCGAC GAGTGA chr9_random|SGP_v1.0_predicted_protein_4|282_AA MSRNRPWCAFFSLLILTLATSEFIYVCILPRNDFLKEIKIMSRLKDPNIIHLLAVCITDD PLCMITEYMENGDLNQFLSRHEPPNSSSSDVRTVSYTNLKFMATQIASGMKYLSSLNFVH RDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLVSSQHFK ALSNNWLGKFTTASDVWAFGVTLWETFTFCQEQPYSQLSDEQVIENTGEFFRDQGRQTYL PQPAICPDSVYKLMLSCWRRDTKNRPSFQEIHLLLLQQGDE* # Gene 5 (Forward). 2 exons. 85 aa. Score = 28.798085 First 253789 253823 1.82 + 0 2 5.10 4.71 2.52 -3.50 AA 1: 12 gene_5 Terminal 255647 255866 26.98 + 1 0 2.28 0.00 13.59 19.40 AA 12: 85 gene_5 chr9_random|SGP_v1.0_predicted_cDNA_5|255_NN ATGCGAAAGGTGGTTTTGATCACCGGGGCTAGCAGTGGCATTGGCCTGGCCCTCTGCAAG CGGCTGCTGGCGGAAGATGATGAGCTTCATCTGTGTTTGGCGTGCAGGAACATGAGCAAG GCAGAAGCTGTCTGTGCTGCTCTGCTGGCCTCTCACCCCACTGCTGAGGTCACCATTGTC CAGGTGGATGTCAGCAACCTGCAGTCGGTCTTCCGGGCCTCCAAGGAACTTAAGCAAAGG TATATCTCTTGCTGA chr9_random|SGP_v1.0_predicted_protein_5|85_AA MRKVVLITGASSGIGLALCKRLLAEDDELHLCLACRNMSKAEAVCAALLASHPTAEVTIV QVDVSNLQSVFRASKELKQRYISC* # Gene 6 (Reverse). 4 exons. 169 aa. Score = 33.947713 Terminal 257385 257449 -6.42 - 2 0 0.00 5.77 4.05 -6.20 AA 148:169 gene_6 Internal 259426 259624 11.43 - 0 1 5.20 3.18 4.84 6.60 AA 82:148 gene_6 Internal 273472 273666 37.61 - 0 0 5.66 5.40 10.43 19.06 AA 17: 81 gene_6 First 277646 277693 -8.67 - 0 0 1.24 1.26 4.26 -4.80 AA 1: 16 gene_6 chr9_random|SGP_v1.0_predicted_cDNA_6|507_NN ATGAAGAAGAAGCAAAAGCAGAAACCCCTGATAAACCCATCAGATCTCATTCGGGAACTG GAGCCTCTCCTCTGTCACAGTGACAATCCATCTCAGCTCATCTGGACATCATCTCGCAGT GCAAGGAAATCTAATTTCAGCCTCGAGGACTTCCAGCACAGCAAAGGCAAGGAACCCTAC AGCTCTTCCAAATATGCCACTGACCTTTTGAGTGTGGCTTTGAACAGGAACTTCAACCAG CAGACCATAAAGAAGATGGAGAGGCACATGGTCAGGGGACAATTGTATAAGCATTTTGAT TTGGAGAGGAAGAATGCCAAGCAGGCTGAAGCCAGACTGGACCAAAGACTGCAGAGACTA AAGGTTATTTGCCTCTACCATGTGAAATTGCTGACCTGGGAGCAGAGGCAGCTCCAAAAA GAACTGCAGAGGTTGCAGCAAGATGCGGTAGAAAACTCTAATAGCTCAGCAGTACTGGAG AGAGAAACCACATTTACAAAGGACTAA chr9_random|SGP_v1.0_predicted_protein_6|169_AA MKKKQKQKPLINPSDLIRELEPLLCHSDNPSQLIWTSSRSARKSNFSLEDFQHSKGKEPY SSSKYATDLLSVALNRNFNQQTIKKMERHMVRGQLYKHFDLERKNAKQAEARLDQRLQRL KVICLYHVKLLTWEQRQLQKELQRLQQDAVENSNSSAVLERETTFTKD* # Gene 7 (Reverse). 2 exons. 92 aa. Score = 64.746472 Terminal 341135 341206 -14.36 - 0 0 0.00 3.99 -0.01 -6.90 AA 69: 92 gene_7 First 343167 343370 79.11 - 0 0 4.49 10.00 29.81 26.80 AA 1: 68 gene_7 chr9_random|SGP_v1.0_predicted_cDNA_7|276_NN ATGGAGCAGTGGCGGCAGTGCGGCCGCTGGCTCATCGATTGCAAGGTCCTGCCGCCCAAC CACCGGGTGGTGTGGCCCTCGGCCGTGGTCTTCGACCTGGCGCAGGCGCTGCGCGACGGG GTCCTTCTGTGCCAGCTGCTGCACAACCTCTCCCCCGGCTCCATCGACCTCAAGGACATC AACTTCCGGCCGCAGATGTCCCAGGTAGGCAACGACCTCCAGAGCCTCAGTTTCCCCATC TCTGTCATGAGAACAGTCATAGCAGTCCCCTCGTAG chr9_random|SGP_v1.0_predicted_protein_7|92_AA MEQWRQCGRWLIDCKVLPPNHRVVWPSAVVFDLAQALRDGVLLCQLLHNLSPGSIDLKDI NFRPQMSQVGNDLQSLSFPISVMRTVIAVPS* # Gene 8 (Reverse). 3 exons. 247 aa. Score = 94.307529 Terminal 492992 493248 32.60 - 2 0 0.00 1.91 33.07 -1.12 AA 162:247 gene_8 Internal 493364 493780 71.10 - 2 1 -2.59 0.23 29.90 48.20 AA 23:162 gene_8 First 531816 531882 -9.39 - 0 1 2.37 -1.54 6.97 -6.70 AA 1: 23 gene_8 chr9_random|SGP_v1.0_predicted_cDNA_8|741_NN ATGGAAGATCATTCCATGCTCATGGGTAGGAAGAAGGAGTATCGTGAAAATGGCCATACT GCCCAAGAAGAAGAATGTGAATGGAAACCAGATGAAGAAGGCAAGATTTCGGAGGAGTTG AAAGAAAAGGCCAAGATTGAAGAAGAGAAGAAGGATGAAGAAAAAGAAGAGCCCATAGGA ATTCCTGAATTTTGGTTAACTATTTTTAAGAATGTTGACTTGCTTAGTGATATGCTTCAG GAACATGATGAACCTATTCTGAAGCACTTTAAATTTATTAAAGTGAAGTTCTTGGATGCT GGCCAGCCTATGAGTTTTGTCTTAGAATTTCACTTTGAACCCAGTGAATATTTTACAAAT GAAGTGCCAACAAAGACATATAGGATGAGGTCAGAACCAGATGATTCTGGTCCCTTTTCT TTTGATGGACTAGAAATTATGGGTTGTACAGGGTGCCAGATAGATTGGAAAAAAAGGAAA GAATTTCCTGAGAGTGGATATCTGGATGATGCTGCTGAAGCTATCCATGCTGCAAACTTC CAAATCAGTCACTTTTTACCTGAGTGTATAATCCCAAGATCAGTGTTATATTTTACTGGA GAAGCTATTGAAGATGATGATGATGATTATGATGAAGAAGGCAAAGAAGCAGATGAGGAA GGGGAAGAAGAAGATGAGGAAAATGATCCAGACTATGAACCAAAGAAAGATCAAAACGCA GCAGAGTGCAAGCAGCAGTGA chr9_random|SGP_v1.0_predicted_protein_8|247_AA MEDHSMLMGRKKEYRENGHTAQEEECEWKPDEEGKISEELKEKAKIEEEKKDEEKEEPIG IPEFWLTIFKNVDLLSDMLQEHDEPILKHFKFIKVKFLDAGQPMSFVLEFHFEPSEYFTN EVPTKTYRMRSEPDDSGPFSFDGLEIMGCTGCQIDWKKRKEFPESGYLDDAAEAIHAANF QISHFLPECIIPRSVLYFTGEAIEDDDDDYDEEGKEADEEGEEEDEENDPDYEPKKDQNA AECKQQ* # Gene 9 (Forward). 2 exons. 99 aa. Score = 25.913567 First 543606 543794 11.40 + 0 0 -0.62 6.11 9.20 3.99 AA 1: 63 gene_9 Terminal 575653 575760 14.51 + 0 0 4.14 0.00 9.37 9.89 AA 64: 99 gene_9 chr9_random|SGP_v1.0_predicted_cDNA_9|297_NN ATGAAGAAGTTTAATTTCCGAAAAGTTTTGGATGGCTTAACTGCCTCCTCCCCTGGCAGT GGTAGCAGCAGTGGCAGTAACAGTGGTGGTGGGGCTGGAAGTGGTTCCGTACATCCGGCG GGGACTGCAGGGGTTCTCAGAGAGGAAATTCAGGAAACTTTGACTTCGGAGTATTTCCAG ATTTGCAAGACAGTTCGGCATGGTTTTCCTCATCAGCCCACAGCATTAGCCTTTGATCCA GTTCAGAAAATCTTGGCTATTGGGACGAGAACAGGTGCTATACGAATGTATCCTTAA chr9_random|SGP_v1.0_predicted_protein_9|99_AA MKKFNFRKVLDGLTASSPGSGSSSGSNSGGGAGSGSVHPAGTAGVLREEIQETLTSEYFQ ICKTVRHGFPHQPTALAFDPVQKILAIGTRTGAIRMYP*