## date Sat Nov 23 16:27:53 2002 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence chr15_random - Length = 655574 bps # Optimal Gene Structure. 8 genes. Score = 456.142399 # Gene 1 (Forward). 2 exons. 84 aa. Score = 3.765057 Internal 6459 6590 2.28 + 1 2 2.45 2.69 5.56 1.38 AA 1: 45 gene_1 Terminal 8402 8519 1.48 + 1 0 0.32 0.00 5.43 6.06 AA 45: 84 gene_1 >chr15_random|SGP_v1.0_predicted_cDNA_1|250_NN CTTTGATCCTGTTGTGGATTTATTTACAAACATCAATTGCCTTCAAGCCATCCTTTCTGC TGTATGTTTTGCAGCCTTCTATAGTAGATACACAACAGATAATGTGGAGAGAAAAGACAT AAGAGGAGGAAGAAAAGAAACAGTGTGTTATGAGGACAGTGGATGCTACAACATTATTTG CCTTCAAGGCATTGCAAACAACCGGAATCAATTGAATAACCTTCTCAAGCACAAGCCAAC AGTGAAATGA >chr15_random|SGP_v1.0_predicted_protein_1|84_AA cFDPVVDLFTNINCLQAILSAVCFAAFYSRYTTDNVERKDIRGGRKETVCYEDSGCYNII CLQGIANNRNQLNNLLKHKPTVK* # Gene 2 (Forward). 1 exons. 60 aa. Score = 7.404988 Single 31178 31357 7.40 + 0 0 0.28 0.00 6.45 12.64 AA 1: 60 gene_2 >chr15_random|SGP_v1.0_predicted_cDNA_2|180_NN ATGACAAAAATCAACACAGCTTTCTCCAAACGCTGCCCGTGCCTGATGGAATTAAACAGA GCTCTGAGAAAAACAGCACCGGGGCCGAGGATGGGTCCTGAGCTGCCTACAGTCATCAAC ATCTTGGCCAGTGGCTATGCATTCAGGGGCAATTTGGCTAGCTTTCTTGATCCACACTAG >chr15_random|SGP_v1.0_predicted_protein_2|60_AA MTKINTAFSKRCPCLMELNRALRKTAPGPRMGPELPTVINILASGYAFRGNLASFLDPH* # Gene 3 (Forward). 3 exons. 143 aa. Score = 14.275807 First 56015 56043 -4.74 + 0 2 4.04 0.76 2.84 -2.90 AA 1: 10 gene_3 Internal 68311 68530 9.19 + 1 0 -0.72 -3.99 9.60 15.66 AA 10: 83 gene_3 Terminal 95709 95888 9.83 + 0 0 -0.80 0.00 14.33 5.89 AA 84:143 gene_3 >chr15_random|SGP_v1.0_predicted_cDNA_3|429_NN ATGCAGCACAACCAGCCCACAATTCAGGGAAGCAAGAGCAACGGCTCTATATCTGGATCA CTGCAGTGCCTAGAAGATACAACAGCACAATTTACAAATCCAAATTTCCAGGAAGTCTCT CCACATACCTCTCGTACAAAAGATGCTTCAGAGACTAGAGGGTCAGAGAGGAAAGAGAGG AAATATTCAACTCCCAGTTCAGGACAAAAGGGAAGAAAGCCTGCTGTTGAAAGAAATCCA AGAATGACTAATACAGACTATGAAGATGATAAGATACTAGAGAATGTAAACTATAACGAC AGAGCTGGAAAACATAGGGAGCAGATTGGAAGCGAAGGAAATTTCCAAAGAGATGATGCT CCTGCATCTGTTCATTCTGAAATTACTGATAGCGACAAAAGTCAGAAGATGTTGAAAAAG ATGTGTTGA >chr15_random|SGP_v1.0_predicted_protein_3|143_AA MQHNQPTIQGSKSNGSISGSLQCLEDTTAQFTNPNFQEVSPHTSRTKDASETRGSERKER KYSTPSSGQKGRKPAVERNPRMTNTDYEDDKILENVNYNDRAGKHREQIGSEGNFQRDDA PASVHSEITDSDKSQKMLKKMC* # Gene 4 (Reverse). 7 exons. 186 aa. Score = 54.263755 Terminal 99517 99522 -7.88 - 0 0 0.00 4.24 0.00 -0.30 AA 185:186 gene_4 Internal 128379 128397 2.25 - 1 0 5.34 5.97 1.10 -1.90 AA 178:184 gene_4 Internal 133251 133361 10.30 - 1 2 -1.92 1.56 9.32 10.58 AA 141:178 gene_4 Internal 134346 134437 9.58 - 0 2 -1.54 2.35 8.57 9.10 AA 111:141 gene_4 Internal 137622 137726 16.90 - 0 0 2.74 4.06 6.90 9.64 AA 76:110 gene_4 Internal 139918 140080 8.17 - 1 0 -1.48 1.77 9.45 9.27 AA 21: 75 gene_4 First 149167 149228 14.94 - 0 2 2.89 6.02 6.88 3.02 AA 1: 21 gene_4 >chr15_random|SGP_v1.0_predicted_cDNA_4|558_NN ATGGCCGAGTACTCTTATGCGAAGTCTACCAAGCTTGTGCTCAAGGGAACCAAGACGAAG AGAATCACCCTGAAATCTGGCTATGGAAAATATCTTGGTATAAATTCAGATGAACTTGTT GTTGGGCATTCAGATGCAATTGGACCAAGAGAACAATGGGAACCAGTCTTTCAAAACCTA AGTGCTGTTATTGTTTATAAAAACTTCCTGTCAGTTTCACACAAAGGGAAAATGGCTTTG TTGGCCTCAAATGGCTGCTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCAAAAAGT AAAACAGCAGGAGAAGAAGAAATGATCAAGATTAGATCCTGTGCTGAAAGAGAAACCAAG AAAAAAGATGACATTCCAGAAGAAGACAAAGGAAATGTAAAACAATGTGAAATCAATTAT GTAAAGAAATTTCAGAGCTTCCAAGAGCACAAACTTAAAATAAGTAAAGAAGACAGTAAA ATTCTTAAAAAGGCTCAGAAAGATGGATTTTTGCAAGAGACGCTTCTGGACAGACAGAAA TTGCAAACTCAGGTGTGA >chr15_random|SGP_v1.0_predicted_protein_4|186_AA MAEYSYAKSTKLVLKGTKTKRITLKSGYGKYLGINSDELVVGHSDAIGPREQWEPVFQNL SAVIVYKNFLSVSHKGKMALLASNGCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETK KKDDIPEEDKGNVKQCEINYVKKFQSFQEHKLKISKEDSKILKKAQKDGFLQETLLDRQK LQTQV* # Gene 5 (Reverse). 7 exons. 426 aa. Score = 316.780227 Terminal 400498 400669 26.16 - 1 0 0.00 -6.00 4.23 43.96 AA 369:426 gene_5 Internal 400845 401094 106.76 - 2 2 0.05 -3.42 23.81 91.72 AA 286:369 gene_5 Internal 401211 401422 91.24 - 1 1 -0.10 -1.81 15.40 85.52 AA 215:286 gene_5 Internal 401449 401611 19.48 - 2 2 -1.05 -1.26 11.97 19.06 AA 161:215 gene_5 Internal 401637 401810 52.01 - 2 1 -0.72 -1.39 12.34 50.78 AA 103:161 gene_5 Internal 402061 402297 21.28 - 2 1 3.14 4.22 8.54 10.92 AA 24:103 gene_5 First 404235 404304 -0.14 - 0 1 3.11 -2.08 3.93 4.41 AA 1: 24 gene_5 >chr15_random|SGP_v1.0_predicted_cDNA_5|1278_NN ATGATCTTCAAGCTAGAACAAGGAGCAGAGCCATGGATAGTAGAAGAAACCCCAAACCTG AGACTTTCAGCTGTCCAGATCATTGATGACCTTATTGAAAGGAGCCATGAAAGTCATGAT AGATTTTTCTGGAAAATTGTAATCACCAACAGCAACACATCAACTCAGGAGAGAGTTGAA TTAGGAAAAACATTTAATTTGAACTCAAACCATGTTTTAAATCTGATTATAAATAATGGA AACAGTTCAGAAATGAAGCCTGGGCAGTTTAATGTCTGCCAGAACGTGCTTTTCCCTATT AAGCCTGGGATAACTCAGGTAGGACAGCCAACTTGCTGTAGAAAGTCTGACTTCACCAAA CATCAGCAAACACACACAGGAGAGAAACCCCATGAATGTGTTGAATGTGAGAAACCCTCC GTTAGCAAATCAGACCTTATGATACAGCACAAGATGCCTACTGAGGAAAAACCTTATGCC TCTGTAAGTCTGGCCTCACTATCCATCAGAGAATTCACACAGGGGGAAAAGCCCTATGGA TGCAATGAATGTGGAAAAACCGTTTGCCATAAGTCATTCCTTACTTTACATCAGAGAACT CATACTGGGGAAAAACCATATGCATGTAACAAATGTGGAAAAACTACATCACAGAACTCA CACGGGAAAAACCCTATGAATGTAATGAATGTGGAAAATCCTTTTACTGTAAGTCATAAG TCATTTCTAACTATACGTCAGAGAACTCATGCTGGCAAAAAACCCTATGAATGTAATAAA TGTGAGAAAACCTTTATCAATAAATTAAACCTTGGGATACACAAGAGAACTCACACAGGG GAAAGACCCTATGAATTCATTCCTCACCATACACCAGAGTACTCACACGGGGAGAAACCG TATGGATGTAACGAAAGTGGAAAAACTTTTTGTCAGAAATCATACCTTATTATACATCAG AGAACTCACACTGGGGAAAAGCTCTATGAATGTAATGAATGTGGAAAATCCTTTCATCAG AAGGCAAATATTCAGAAGCATCAAGGTATTCACACGGGGGAGAAACCCTATGAATGTAGC AAATGTGGAAAAACCTTCAGTCAGAATATACATCAGAGAACACACACAGGAGAAAACCCT TATAAATGTAAGGAATGTGGGAAAACCTTTTGCCGGAAGTCACACCTCAGCAGGCATCAA CAAACCCATATAGGAGAGAAATCTGATATAGCTGATGCAGGCTATGTATTCCCTCAAAAT CACTTTTTTTTCCCTTGA >chr15_random|SGP_v1.0_predicted_protein_5|426_AA MIFKLEQGAEPWIVEETPNLRLSAVQIIDDLIERSHESHDRFFWKIVITNSNTSTQERVE LGKTFNLNSNHVLNLIINNGNSSEMKPGQFNVCQNVLFPIKPGITQVGQPTCCRKSDFTK HQQTHTGEKPHECVECEKPSVSKSDLMIQHKMPTEEKPYASVSLASLSIREFTQGEKPYG CNECGKTVCHKSFLTLHQRTHTGEKPYACNKCGKTTSQNSHGKNPMNVMNVENPFTVSHK SFLTIRQRTHAGKKPYECNKCEKTFINKLNLGIHKRTHTGERPYEFIPHHTPEYSHGEKP YGCNESGKTFCQKSYLIIHQRTHTGEKLYECNECGKSFHQKANIQKHQGIHTGEKPYECS KCGKTFSQNIHQRTHTGENPYKCKECGKTFCRKSHLSRHQQTHIGEKSDIADAGYVFPQN HFFFP* # Gene 6 (Forward). 1 exons. 56 aa. Score = 6.512713 Single 582822 582989 6.51 + 0 0 -1.63 0.00 5.51 13.93 AA 1: 56 gene_6 >chr15_random|SGP_v1.0_predicted_cDNA_6|168_NN ATGGCTGGGGAGGTAGCAATAAAGAAAATGAACCTCCTGCCAGTGATTCTTTTTCAAGCC CTGCCAATTCCTGTGTCTGGGGAAGCTATAAAGAATGTCCAGCCTCATGTCAAAAGAATT GCCACAGATCTCCAGCTCACCTGCATTGAAGCATTGAAACATCCCTAA >chr15_random|SGP_v1.0_predicted_protein_6|56_AA MAGEVAIKKMNLLPVILFQALPIPVSGEAIKNVQPHVKRIATDLQLTCIEALKHP* # Gene 7 (Forward). 2 exons. 91 aa. Score = 14.169122 First 595349 595374 -2.60 + 0 2 5.61 2.22 0.47 -2.60 AA 1: 9 gene_7 Terminal 631324 631570 16.77 + 1 0 -0.72 0.00 11.07 17.19 AA 9: 91 gene_7 >chr15_random|SGP_v1.0_predicted_cDNA_7|273_NN ATGGCGAGGAAGCTGGCGGGGCACGGAAGCAAGAGCAACGGCTCTATATCTGGATCACTG CAGTGCCTAGAAGATACAACAGCACAATTTACAAATCCAAATTTCCAGGAAGTCTCTCCA CATACCTCTAGTACAAAAGATGCTTCAGAGACTAGAGGGTCAGAGAGGAAAGAGAGGAAA TATTCAACTCTCAGTTCAGGACAAAAGGGAAGAAAGCCTGCTGTTGAAAGAAATCCAAGA ATGACTGTGTCTGCAACTCGCTCCTTTCTGTAA >chr15_random|SGP_v1.0_predicted_protein_7|91_AA MARKLAGHGSKSNGSISGSLQCLEDTTAQFTNPNFQEVSPHTSSTKDASETRGSERKERK YSTLSSGQKGRKPAVERNPRMTVSATRSFL* # Gene 8 (Reverse). 3 exons. 104 aa. Score = 38.970731 Terminal 636265 636379 11.74 - 1 0 0.00 1.56 7.72 11.30 AA 66:104 gene_8 Internal 637360 637451 10.35 - 0 2 -1.54 2.35 9.13 9.10 AA 36: 66 gene_8 Internal 640638 640742 16.88 - 0 0 2.74 4.06 6.88 9.64 AA 1: 35 gene_8 >chr15_random|SGP_v1.0_predicted_cDNA_8|312_NN GGGAAAATGGCTTTGTTGGCCTCAAATGGCTGCTTTATTAGATGCAATGAAGCAGGGGAC ATAGAAGCAAAAAGTAAAACAGCAGGAGAAGAAGAAATGATCAAGATTAGATCCTGTGCT GAAAGAGAAACCAAGAAAAAAGATGACATTCCAGAAGAAGACAAAGGAAATGTCAAACAA TGTGAAATCAATTATGTAAAGAAATTTCAGAGCTTCCAAGAGCACAAACTTAAAATAAGT AAAGAAGACAGTAAAATTCTTAAAAAGGCTCAGAAAGATGGATTTTTGCATGAGACGCTT CTGGACAGGTAG >chr15_random|SGP_v1.0_predicted_protein_8|104_AA GKMALLASNGCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQ CEINYVKKFQSFQEHKLKISKEDSKILKKAQKDGFLHETLLDR*