Bioinformatics and Genomics Node

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Co-expressed gene clustering workflow submission page


Data input

Select the type of data you wish to submit:

List of genes     FASTA sequences

Mapping configuration

Please select the collection of weight matrices to perform the mapping from nucleotides into TF binding sites
(please click here for further information about the mapping functions)
Transcription Factor Binding Sites (TFBSs) collections:
Mapping threshold quality:
Transfac v6.4: 610 matrices
Jaspar: 123 matrices


TF-MAP pairwise alignments configuration

Please select the parameters to perform the TF-map pairwise alignments
(please click here for further information about the pairwise meta-alignment parameters)

α value:
λ value:
μ value:


SOTA clustering configuration
Distance function:
Resource threshold:


TF-MAP multiple alignments configuration

Please select the parameters to perform the TF-map multiple alignments
(please click here for further information about the multiple meta-alignment parameters)

α value:
λ value:
μ value:
γ value:
c value:


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